Show newer

Registration to “What is memory?” Brain Mind Institute Symposium is now open! Places are limited and it’s first come first serve so go for it, now, & please boost this news! Looking forward to seeing you all there!

bmisymposium.epfl.ch/home/feb2

#neuroscience #genetics #memory

We read this very cool paper from Ayelet Sarel, Shaked Palgi, Dan Blum, Johnatan Aljadeff, Liora Las & Nachum Ulanovsky in our lab meeting today.

nature.com/articles/s41586-022 (open access!)

They recorded from two bats flying back and forth in a 135m tunnel. They wirelessly recorded from the hippocampus of one of the bats and recorded the position and ultrasonic vocalizations of the bats. As the bats approach each other, they dramatically increase their vocalizations (presumably to avoid collision).

Hippocampal place cells are modulated by the relative position of the animals in complex ways, and this modulation is very rapid (turns on and off within a few seconds) as the bats approach each other.

I think the paper is quite a beautiful demonstration of how we can use ethological phenomena (like the sudden appearance of a conspecific) to better understand neural dynamics.

That said, I have a substantial concern with the paper. Hopefully, this toot might find its way to the authors - encourage them to join mastodon and reply :)

The authors analyze the neural activity relative to the tunnel , which they call "position" and with respect to the other bat which they call "interbat distance". However, the measure that they call "interbat distance" is not distance. Euclidean distance along a line is defined as +√((x₂-x₁)²). **It is always positive**. The authors _redefined_ distance to be the signed value x₂-x₁. This quantify is the position of x₂ relative to x₁, not the distance.

You might think that I'm being pedantic. Maybe the authors just thought it would be clearer to talk about "position" and "distance" instead of saying "tunnel position" and "position relative to other bat". However, they claim that "hippocampal neurons can rapidly switch their core computation to represent the relevant behavioural variables." If we change their wording to my wording, then what they have shown is that hippocamal neurons can rapidly switch the reference point that is being used to represent their current position, including using a reference point that is moving.

This is still a cool result. But is less novel. There is extensive work examining how hippocampus remaps or "reregisters" place cells when animals have to monitor multiple reference frames. A nice example is from [André Fenton's lab](journals.plos.org/plosbiology/). The authors cite Fenton's work but say that Fenton "reported switching between two position maps, whereas here we found switching from position representation to distance-by-position representation." And that, i think really underscores how their redefinition of distance influenced the way they think about their results.

Be cautious in interpreting the results from fitting cognitive/computational models!

This is, in some ways, obviously true. But it is quite common in the field (and even in my own work) to "over-interpret" results from model fitting. I think the real long term solution to this is pre-registration, so that we are not using models to "discover" effects but to make specific predictions.

elifesciences.org/articles/754

A [great article on the problem of over-optimisation](sohl-dickstein.github.io/2022/) of _proxies_ for the things we actually care about.
```
Goal: Rapid progress in science

Proxy: Pay researchers a cash bonus for every publication

Strong version of Goodhart's law leads to: Publication of incorrect or incremental results, collusion between reviewers and authors, research paper mills
```
sohl-dickstein.github.io/2022/

RT @NatRevNeurosci
Attractor and integrator networks in the brain — a Review by Mikail Khona & Ila Fiete

@KhonaMikail @FieteGroup

go.nature.com/3Wx5m7k

Intro time. Hi #sciencemastodon - I'm Co-Founder of the #preprint servers bioRxiv & medRxiv at Cold Spring Harbor Lab, where I also oversee CSH Perspectives and other #publishing projects. I trained as a molecular biologist. My goal is to improve science communication.

Learn more about bioRxiv at doi.org/10.1101/833400 - and on the podcast tinyurl.com/y8rbttwz

I'm also interested in promoting understanding of different career paths for academics. More at tinyurl.com/4papvn5z

Twitter was free because we were the product of a marketing service.

Mastodon is free software but someone will have to pay the bill for the servers. When the server admins come asking for help, don't be offended and be ready to chip in

What's the latest word on whether the FEF represents horizontal space more than vertical space?

Dear Americans - Especially young people!
Please go vote! I know it is hard to choose between a turd sandwich and a douche, but it really does make a difference!

My #introduction

Living in Edinburgh 🏴󠁧󠁢󠁳󠁣󠁴󠁿

I work at GitHub on data product related things, and, when no-one is looking, try to squeeze the odd academia-related feature in (e.g. citation file support). Previously worked on NASA space telescopes, founding the Data Science Mission Office at STScI in Baltimore (home of HST and JWST).

In my 'free' time, I am the Editor-in-Chief of the Journal of Open Source Software (joss.theoj.org).

are you, like me, here but not really sure how it works? Never fear, the data witch strikes AGAIN! check out this amazing mastodon explainer for #rstats and data people from
@djnavarro blog.djnavarro.net/posts/2022-
- I feel much more comfortable here after reading it!

Hey all - #introduction to Mastodon. I run a #neuroscience research lab at the University of Minnesota. I’m interested in how the brain creates motivation. If I end up posting here you will also see my cats.

If you’re attending the Society for Neuroscience conference next week, we have a ton of cool posters in the Wed AM session. If this kind of thing interests you get in touch! We’re recruiting off of a couple new research grants for 2023.

#introduction: I am obsessed with the biology of #hallucinations and #delusions.

I am a #newPI at the Francis Crick Institute, London. In our lab, the #Psychosis Collective, we study the neural circuits and immune processes underlying unfounded perceptions and thoughts 🐭 👤 . I look forward to great #neuroscience #immunology #neuroimmunology #psychiatry here!

This is me moving to London without ever having been to London before.

The lab has two posters at SFN this year!

567.08. The rat frontal cortex encodes a value map in support of economic decisions under risk abstractsonline.com/pp8/#!/106

217.11. Distinct roles for rat premotor cortex in World-Centered versus Self-Centered Planning
abstractsonline.com/pp8/#!/106

We are looking for postdocs! (1) To study how brainwide neuronal activity supports diverse behaviors (w Kenneth Harris); (2) To relate the activity of a neuron to its pre- and postsynaptic neurons across cortex (w Alipasha Vaziri and Federico Rossi). tinyurl.com/CortexlabPostdoc

Applications are open for the 2023 Wellcome Optical Biology PhD Programme at UCL. Deadline is January 9, 2023 (opticalbiology.org/apply).

Mastodon friends, I wrote a thread on Twitter that asks for commitments to three behaviors to maximize the chances for a successful transition of the community discussion to this platform. Please have a look and retweet it if you are willing to commit to the behaviors for November:

twitter.com/BrianNosek/status/

new blog post -- hypothesis testing by example #rstats #statistics #statsed

if you teach stats, i highly recommend giving this problem in intro stats course! it's also fun to try on your own 🤔 😊!

alexpghayes.com/post/2022-11-0

Show older
Qoto Mastodon

QOTO: Question Others to Teach Ourselves
An inclusive, Academic Freedom, instance
All cultures welcome.
Hate speech and harassment strictly forbidden.