Dimitris Nakos, MSc

I'm doing an essay on asynchronous Kauffman boolean networks (using N=9, K=3). I seem to not be able to locate any attractors, at least not anything that I can recognise (i.e. a specific set of states that when they appear the system will stay in these states or cycle through them). Also there is nothing consisten when starting from the same initial condition. Am I missing something here?

Thanks for the help in advance!!

#networks #BooleanNetworks #asynchronousnetworks #attractors

Loïc Paulevé

Proud of publishing my first @PeerCommunityJournal paper after recommendation from PCI MathCompBiol 😃

I present a logical modeling and resolution method for #reprogramming the fixed points and minimal trap spaces of #BooleanNetworks, which accounts for the creation of new attractors:
peercommunityjournal.org/artic

Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis

peercommunityjournal.org
Luis M. Rocha

Super happy to have participated on this special issue on the principle of dynamical #criticality. It was really fun to expand our work on effective connectivity, #canalization and #redundancy with Jordan Rozum, Felipe Costa, and Austin Marcus. An a bonus for publishing in #Entropy---makes me feel quite cybernetic! #complexsystems #BooleanNetworks #Dynamics #networkScience #ComputationalBiology
mdpi.com/1099-4300/25/2/374

Effective Connectivity and Bias Entropy Improve Prediction of Dynamical Regime in Automata Networks

Biomolecular network dynamics are thought to operate…

www.mdpi.com
Loïc Paulevé

#Introduction Hey 🐘, I'm Loïc, a French researcher at LaBRI, computer science lab of the University of Bordeaux.

My research is at the intersection of #FormalMethods and #SystemsBiology, where we struggle to formalize biological questions and data.
I'm working on #BooleanNetworks, how they are adequate to abstract quantitative systems, how to infer them, how to verify and control them. This also involves some software development, and very importantly, exciting #interdisciplinary challenges!