#CellProfiler

Brilliant final seminar by our phenomenal #AdriftLab student, Gabbi and her superb team of supervisors

Gabbi looked at how we can more accurately & efficiently define #plastic #colour. How the #plastics community currently reports colour is hugely problematic (very ad hoc). Stay tuned for our free, user-friendly tool to streamline your #PlasticPollution workflow.

#CellProfiler #TeamWork #ThesisSubmission #MethodDevelopment #StandardiseReporting #PlasticIngestion #Seabirds #BeachPlastic @SeabirdSentinel @TheLabAndField @Jobium

I have this silly question about #imagesegmentation. So is there any advantage to using different software for image segmentation? I see #ImageJ, #CellProfiler, #Napari and #Python all can do this, but if the underlying algorithm is the same, then why not just stick with ImageJ?

Looking to learn more about #bioimageanalysis in 2023? Reminder that every other Friday (including this Friday), the
#CellProfiler team hosts
Center for Open Bioimage Analysis (openbioimageanalysis.org) Office Hours! Signups can always be found at broad.io/imagingofficehours

@bethcimini thanks for putting it out ! I am a newbie bioinformatician with very little biology knowledge , and have been greatly inspired by @DrAnneCarpenter work on #CellProfiler and it's impact on drug discovery at Recursion, and wanting to learn about microscopy and imaging. Does this primer assume some biology knowledge as a prereq ?

Have you discovered the image processing forum yet? https://forum.image.sc

Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

#java #python #kotlin #groovy

#Introduction Part 2:
My lab invented the open-source software CellProfiler and the imaging assay Cell Painting and we now focus on using our machine learning and deep learning skills for image-based profiling, to accelerate drug discovery and functional genomics. Our research led to the founding of Recursion, a clinical-stage techbio powered largely by the information in cell images.

#CellProfiler #DrugDiscovery #TechBio #RXRX #MachineLearning #DeepLearning

Have you discovered the image processing forum yet? https://forum.image.sc

Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
#java #python #kotlin #groovy