#merfish

Amazing work:

"Highly multiplexed spatial transcriptomics in bacteria" by Sarfatis et al. in Science

1000-fold volumetric expansion of E. coli cells paves the way to image-based single-cell transcriptomic

#MERFISH
https://www.science.org/doi/10.1126/science.adr0932

bioRxiv:
https://www.biorxiv.org/content/10.1101/2024.06.27.601034v1

COMMOT, COMMunication analysis by Optimal Transport, a versatile tool infer cell–cell communication in #SpatialTranscriptomics

Compatible with #MERFISH #Visium seqFISH+ #STARmap

vs #CellChat #Giotto #CellPhoneDBv3

Dr. Qing Nie lab Nature Methods 2023
https://www.nature.com/articles/s41592-022-01728-4

If you work on the spatial transcriptome data. Our tool may help you https://monkeybread.readthedocs.io/en/latest/ #merfish #spatial

Joint Sparse method for Imaging Transcriptomics (JSIT) for decoding imaging spatial transcriptomics data such as MERFISH. Better performance than the original pipeline (MERlin) according to the authors. #SpatialTranscriptomics #matlab #merfish #bioinformatics #tools
https://www.biorxiv.org/content/10.1101/2022.11.22.517523v1.full

Joint Sparse method for Imaging Transcriptomics (JSIT) for decoding imaging spatial transcriptomics such as MERFISH. Better performance than the original pipeline (MERlin) according to the authors. #SpatialTranscriptomics #matlab #merfish #bioinformatics #tools
https://www.biorxiv.org/content/10.1101/2022.11.22.517523v1.full