#nifti
These are public posts tagged with #nifti. You can interact with them if you have an account anywhere in the fediverse.
I posted a new introduction to surface #gifti and volume #NIfTI #fMRI data at https://mvpa.blogspot.com/2025/01/intro-to-working-with-volume-and.html.
The material is mostly general, with all examples using #baseR #rstats code; it's accompanied by a major update to my gifti #knitr tutorial.
I hope these will be useful to folks getting started with #neuroimaging datasets, as well as anyone looking for example scripts for reading, plotting, and manipulating (human fMRI) brain data files.
When preparing to update my surface (gifti) tutorial…
mvpa.blogspot.comThe call for contributions to the Orthanc Conference 2023 is now open! Topics of interest include:
Orthanc-specific contributions:
- Real-world deployments of Orthanc (clinical departments, hospitals, regional/country-wide implementations,...).
- Scientific projects that leverage Orthanc.
- Industrial applications built using Orthanc.
- Extensions to Orthanc (scripts, plugins,...).
Contributions beyond Orthanc:
- Free, libre and open-source software (FLOSS), as well as open hardware projects, for medical imaging and digital pathology.
- FLOSS for the automated analysis of medical images (computer vision, deep learning, and machine learning).
- Healthcare interoperability through FLOSS and open standards (#DICOM, #BIDS, #NIfTI, #IIIF, #FHIR,...).
Deadline: Early September.
Full information is available at: https://www.orthanc-server.com/static.php?page=orthanc-con-2023
Major thanks to @tannguyen for spotting and reporting a bug in my niftiPlottingFunctions.R plot.volume() function!
The code at https://osf.io/k8u2c is updated; see https://mvpa.blogspot.com/2023/03/bugfix-for-niftiplottingfunctionsr.html for info and examples.
(This #baseR #rstats function is for plotting #fMRI #nifti images in #knitr documents.)
... it is painful to find out there was a bug, but so much better to fix it than to continue its propagation! I am grateful to @tannguyen and hope anyone else seeing something odd lets me know.
#36c3 Surprise: #NIFTI ist online: https://nifti.org - die Karte der FNIT-Gruppen mit Interesse an Technik in Hamburg, Berlin, Köln, Hannover, Karlsruhe, Stuttgart, Frankfurt, Bamberg, Göttingen, Bielefeld, ...