#cellpose

After a day and a half of #ImageAnalysis in the cloud with #dask by the IDR team, Damian Dalle Nogare takes over a practical session to apply several #AI models for cell segmentation using #Cellpose

Despite all their hype in AI, we found that Transformers do not outperform #Cellpose for cellular segmentation tasks: https://www.biorxiv.org/content/10.1101/2024.04.06.587952v1

#bioinformatics #biology #machinelearning

#Cellpose 3! Not all images are perfect. Restore your images with Cellpose3 to get better segmentations. @marius10p https://www.biorxiv.org/content/10.1101/2024.02.10.579780v1

(click to play gif)

AI under the microscope: the algorithms powering the search for cells: https://go.nature.com/3SVdFur. Nice article by Michael Eisenstein about cellular segmentation, with a shout out to #cellpose :)

@ogi thanks, I did not realize this before, that's great. and yes use pyqtgraph in a bunch of projects, #cellpose is our most popular software tool that uses it: https://github.com/MouseLand/cellpose

Cell/nuclei segmentation by training deep learning models for #CellPose and #StarDist incrementally, using sparse annotations

Latest work by Ko Sugawara, initiated in our team and completed at RIKEN

https://www.biorxiv.org/content/10.1101/2023.06.13.544786v1.full.pdf

I tried #CellPose model on materials science data. Looks like cellpose is not just for cells! Got very good results with small data set and 45 min training on Google colab . #python #deeplearning #Microscopy

I tried #CellPose model on materials science data. Looks like cellpose is not just for cells! Got very good results with small data set and 45 min training on Google colab . #python #deeplearning #bmicroscopy

Can chatGPT also answer github issues for me? #cellpose