#proteomics

Do you have a Ph.D. in #proteomics or analytical chemistry? Denmark could be your new home!

The Proteomics Specialist (Staff Scientist) responsibilities will inclulde:

- Developing new and running previously implemented LC-MS based proteomics workflows (sample preparation, absolute and relative quantification as well as identification)
- Implementing quality control systems for all proteomics related analyses
- Handling and reporting experimental data in reports, lab notebooks and LIMS-systems
- Writing and maintaining SOPs
- Flexibly and proactively helping other team members within the Analytics Team and efficiently collaborating with other research groups and departments within DTU

https://efzu.fa.em2.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_2001/job/5140/?utm_medium=jobshare&utm_source=External+Job+Share

#fedihired

Optimization of Extraction Methods for the Quantification of Proteins in Mammalian Tissues https://pubs.acs.org/doi/10.1021/acs.analchem.4c05751

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#proteomics #prot-paper

Proteomics Specialist - DTU Biosustain | JobTeaser https://www.jobteaser.com/da/job-offers/f3c16620-807c-4874-a1f4-6a55af4ea012-dtu-danmarks-tekniske-universitet-network-profile-proteomics-specialist-dtu-biosustain

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#proteomics #prot-jobs

Tumour necrosis factor receptor associated factor 7 (TRAF7:p) has so many interesting things going on that it really deserves more attention & probably a better name. The structure/PTM relationship has two pS low complexity transition zones in the N-terminal pIDR. #proteomics

Thesis | Sample Preparation and Acquisition Strategies to Improve Accessibility and Proteome Depth in Single-Cell and Low-Input Proteomics https://scholarsarchive.byu.edu/etd/10819/

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#proteomics #prot-other

Thesis | Innovations in Sample Handling Automation to Increase Accessibility of Sample-Limited Proteomics https://scholarsarchive.byu.edu/etd/10799/

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#proteomics #prot-other

News in Proteomics Research blog post | Lessons learned migrating proteomics to HPC (high performance computing) environments! https://proteomicsnews.blogspot.com/2025/05/lessons-learned-migrating-proteomics-to.html

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#proteomics #prot-other

Quality Control in the Mass Spectrometry Proteomics Core: A Practical Primer · Volume 35(3); 2024 Sep https://jbt.pubpub.org/pub/fid694bn/release/1

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#proteomics #prot-paper

Mitogen-activated protein kinase 3 (MAPK4:p) kinase (MAP2K3:p) kinase (MAP3K3:p) kinase (MAP4K3:p). Shows the 2 general categories of phosphoIDR: a slender region between structured domains with a simple pS/T zone & a bulkier IDR that may have > 1 pS/T zones in low complexity regions. #proteomics

Recent advances in proteomic workflows to interrogate the SUMOylome in plants https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70176

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#proteomics #prot-paper

Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation https://www.biorxiv.org/content/10.1101/2025.05.05.652267v1.full.pdf+html

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#proteomics #prot-preprint

Ultra-High Resolution Solid-State NMR for High Molecular Weight Proteins on GHz-Class Spectrometers https://www.biorxiv.org/content/10.1101/2025.05.05.652283v1.full.pdf+html

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#proteomics #prot-preprint

AlphaFold Database Structure Extractor: A web server and API to download AlphaFold structures using common protein accessions https://www.researchsquare.com/article/rs-6583051/v1

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#proteomics #prot-preprint

Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer https://pubs.acs.org/doi/10.1021/acs.jproteome.5c00016

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#proteomics #prot-paper

Leveraging pretrained deep protein language model to predict peptide collision cross section https://www.nature.com/articles/s42004-025-01540-z

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#proteomics #prot-paper

Discovery of Proteoforms Associated with Alzheimer’s Disease Through Quantitative Top-Down Proteomics https://www.sciencedirect.com/science/article/pii/S1535947625000817?dgcid=rss_sd_all

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#proteomics #prot-paper

Do-It-Yourself De Novo Antibody Sequencing Workflow that Achieves Complete Accuracy of the Variable Regions https://pubs.acs.org/doi/10.1021/acs.jproteome.5c00210

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#proteomics #prot-paper

Two-Step Peptide Solubilization Increases Coverage in High-Sensitivity NanoHILIC/MS/MS-Based Proteomics https://pubs.acs.org/doi/10.1021/acs.analchem.5c00011

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#proteomics #prot-paper

Mitogen-activated protein kinase 4 (MAPK4:p) kinase (MAP2K4:p) kinase (MAP3K4:p) kinase (MAP4K4:p). The naming of these guys reminds me of a conversation I had with a German grad student teaching him French numbering. When we got to the French for "neunzig", he thought I was joking. #proteomics

Quantitative Label-Free Single-Cell Proteomics on the Orbitrap Astral MS https://www.sciencedirect.com/science/article/pii/S1535947625000805?dgcid=rss_sd_all

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#proteomics #prot-paper