Big thanks to @BrancoLab and @deMendoza_Alex for putting this amazing resource together 🎉! And kudos to @xunchen85 and @groza_cristian for their amazing contributions... 👇 1/4
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RT @BrancoLab
Enjoyed (well... maybe not the nitty gritty editing) putting together this TE methods book with @deMendoza_Alex. If you're a #TE aficionado or wanna-be, look out for its release in the New Year. https://link.springer.com/book/10.1007/978-1-0716-28…
https://twitter.com/BrancoLab/status/1598331922102493184
With the brilliant @xunchen85, we describe the use of short-reads methods to detect #Transposon insertion polymorphism against a reference genome https://link.springer.com/protocol/10.1007/978-1-0716-2883-6_4 2/4
Bonus Chapter: the ultimate guide to using #dnaPipeTE!!! https://link.springer.com/protocol/10.1007/978-1-0716-2883-6_2 4/4
Big big big thanks to @guilbourque for the sustained support the last two year! Such a great group full of talents! 🎉👏✌️
Next, the amazing @groza_cristian describe a #pangenome approach to detect and genotype #Transposon insertions, which is the foundation of our new tool GraffiTE! 3/4 https://link.springer.com/protocol/10.1007/978-1-0716-2883-6_5 https://github.com/cgroza/GraffiTE