Molnupiravir increases SARS‐CoV‐2 genome diversity and complexity: A case‐control cohort study
https://onlinelibrary.wiley.com/doi/10.1002/jmv.29642
> Molnupiravir, an oral direct-acting antiviral effective in vitro against SARS-CoV-2, has been largely employed during the COVID-19 pandemic, since December 2021. After marketing and widespread usage, a progressive increase in SARS-CoV-2 lineages characterized by a higher transition/transversion ratio, a characteristic signature of molnupiravir action, appeared in the Global Initiative on Sharing All Influenza Data (GISAID) and International Nucleotide Sequence Database Collaboration (INSDC) databases. Here, we assessed the drug effects by SARS-CoV-2 whole-genome sequencing on 38 molnupiravir-treated persistently positive COVID-19 outpatients tested before and after treatment. Seventeen tixagevimab/cilgavimab-treated outpatients served as controls. Mutational analyses confirmed that SARS-CoV-2 exhibits an increased transition/transversion ratio seven days after initiation of molnupiravir. Moreover we observed an increased G->A ratio compared to controls, which was not related to apolipoprotein B mRNAediting enzyme, catalytic polypeptide-like (APOBEC) activity. In addition, we demonstrated for the first time an increased diversity and complexity of the viral quasispecies.
I'm doing little news roundups now. I think it helps to focus all the stories and information flying around into a coherent narrative:
A Matter of When, Not If https://www.okdoomer.io/bird-flu-has-mutated-300-times/
‘COVID’s ability to mutate underscores the need to get boosted.’
By this winter, those eligible may get a newer vaccine, yet the dominant variant will most likely be newer than the one the vaccine was developed to protect us against. ✍️ @julia_doubleday
After 10 months off for my science journalism fellowship at MIT I’m jumping back into infectious disease reporting and uh boy I’m not gonna be bored am I?!
Here's a first story on #h5n1 in cows (and I'll try to write a thread later):
May 8, 2024- “Recent studies have suggested that long COVID may be caused by a prolonged, subclinical infection leading to the establishment of a viral reservoir, potentially in the gut, that can modulate host immune responses and contribute to persistent cognitive symptoms.” “Long COVID May Have Long-Term Impact on Surgery” https://www.facs.org/for-medical-professionals/news-publications/news-and-articles/bulletin/2024/may-2024-volume-109-issue-5/long-covid-may-have-long-term-impact-on-surgery/
Financial press providing far more honest reporting on #LongCovid than the regular press, exhibit number ∞. That shouldn't be a surprise, but I wonder, where are the labor unions and such demanding e.g. improvements in indoor air quality at workplaces?
https://www.ft.com/content/bb09a03d-4a87-4cea-ae87-986769fd4680
What do I need to know about growing my own potatoes?
The paper has some salient, and interesting facts. It's always amazing to me what research comes out of these types of situations, and what assumptions that were made previously don't hold up to scrutiny.
"Here we evaluate the expression of IAV receptors in situ in the mammary gland, respiratory114 tract and cerebrum of cattle, which typically has been considered less susceptible to IAV115 infection5 . Strikingly, was the finding that both the human- (SA-α2,6) and the duck receptors116 (SA-α2,3-Gal-β1,3) were highly expressed in the mammary glands, whereas no expression of117 the chicken receptor (SA-α2,3-Gal-β1,4) was detected. A previous study showed that co-expression118 of both the human- and avian receptors can enhance the receptor binding of H5N1119 isolated from ducks (clade 2.1.1) in vitro23. Combined these findings support the hypothesis120 that the high viral load seen in milk from cows infected by HPAI H5N1 virus belonging to121 clade 2.3.4.4b are due to local viral replication, because these viruses have high affinity for this122 receptor24. Additionally, the avian receptor has been found to be highly expressed in the human123 cornea and conjunctiva25 which may explain the report that conjunctivitis was the dominating124 clinical sign of a person presumably infected by dairy cows in Texas 7."
"The transmission route(s) and the pathogenesis of H5N1 in cows remain unclear,126 and it’s not known if the virus enters the mammary gland by an ascending infection or127
systemically by the blood supply.
...
Suggestions by the USDA that only some udder quarters may be133 involved in infection does, however, argue against a viremic source27."
"The investigation of the IAV receptor distribution in the respiratory tract also135
revealed some novel findings. In the upper respiratory tract and upper part of the lower136 respiratory tract (trachea, bronchi, and bronchioles), the chicken receptor (SA-α2,3-Gal-β1,4)137 was expressed on the surface of the respiratory epithelium, whereas a lack of - or very limited138 expression - of the human and duck receptors was detected. This pattern is the opposite to what139 we found in the mammary gland. The lack of expression of the human receptor in the upper140 respiratory tract of cattle contrasts with findings in humans25,28 and swine22,25 and supports the141 perception that bovines are highly resistant to infection with influenza A viruses of human and142
swine origin when exposed by the respiratory route1,29. In the lung alveolar cells, however, all143 three receptors were abundantly expressed, similar to what has been found in pigs and144
humans22,25,28."
After a peaceful weekend in the woods and some reflection, I decided I am not going to live blog all of the articles that come out about H5N1 any further. I think a lot of it is distraction. That said, I would still like to keep up on the science, and I'm sure other people would, too.
So here's a new story on an article discussing how cows might be a "mixing vessel" for influenza that digs into the receptor types. It "found that tissue from the mammary gland contains abundant receptors of the kind to which avian flu viruses like H5N1 can attach. But brain and respiratory tract tissues contained far fewer of this type of receptor."
https://www.statnews.com/2024/05/06/bird-flu-spread-study-of-h5n1-virus-infection-in-cows/
https://www.biorxiv.org/content/10.1101/2024.05.03.592326v1.full.pdf+html
"Human IAVs24 preferentially bind SA-α2,6 (human receptor), whereas avian IAVs have a preference for α2,325
(avian receptor). The avian receptor can further be divided into two receptors: IAVs isolated26 from chickens generally bind more tightly to SA-α2,3-Gal-β1,4 (chicken receptor), whereas27 IAVs isolated from duck to SA-α2,3-Gal-β1,3 (duck receptor). We found all receptors were28 expressed, to a different degree, in the mammary gland, respiratory tract, and cerebrum of beef29
and/or dairy cattle. The duck and human IAV receptors were widely expressed in the bovine30 mammary gland, whereas the chicken receptor dominated the respiratory tract. In general, only31 a low expression of IAV receptors was observed in the neurons of the cerebrum. These results32 provide a mechanistic rationale for the high levels of H5N1 virus reported in infected bovine33
milk and show cattle have the potential to act as a mixing vessel for novel IAV generation."
Science finally catching up with what I've been raving about for years.
From the article:
"At $190 a ton, the utility industry averaged damages more than twice its profits. Materials manufacturing, energy and transportation industries all had average damages that exceeded their profits."
There is no profit when we account for negative externalities -- all of capitalism is premised on an accounting lie that doesn't work if, you know, we *actually account* for the pollution. Capitalist economics have always been premised on destroying our biosphere for free.
If you can't destroy the biosphere by using it as your own free cesspool -- you can't profit.
It's fucking physics. Balance the equations.
For sure, but, bailouts are always more convenient for our politicians than any other solution.
Your question really made me think, and I have a theory that ties into something I've been noticing.
The H5N1 story is actually good for Rich People's Yacht Money.
Rather than a doomer news cycle of COVID and climate change there's this new hot topic and it hasn't actually happened. It's a theoretical, and it reminds people that they need to live life today, because something worse might be coming.
I've been surprised at the extent that people have taken their eyes off of COVID to look at H5N1. One is a raging 5 alarm fire, and one's storm clouds on the horizon with maybe some distant rumbling thunder.
Every day you wake up you're either 1 day or 100 years from the next pandemic, and that's been true every day of your life and will likely be for the rest of your life.
I've mentioned this in passing a couple of times over the last couple of weeks, but, this is the realistic outcome for a lot of the dairy and meat industry. The dairy farm down the road from me sells raw milk to people and has MAGA, Trump and Don't Tread on Me flags surrounding their acreage. Federal employees will step foot on that property only after the owners are dead. With 10's of thousands of dairy farms alone there's zero chance public health can "control" this the way many people want.
New Covid strain dubbed 'FLiRT' is 'harder to stop' and has increased vaccine immunity
The newest Coronavirus strains have been called FLiRT, with one of them accounting for a rise of around 25% in cases across the United States, as the UK death toll increased by 12%
https://www.dailystar.co.uk/news/world-news/new-covid-strain-dubbed-flirt-32747928
Do you know of any #solarpunk #education materials to be used in a summer camp in a forest, for kids between 4 and 7 grade?
I'm thinking some #scout games / materials could be sensible, but how to make them more about #futurism , #narratives and wider #climate contexts?
Maybe showing how real forests ecosystems and microclimates differ from games like #minecraft where they're just to be extracted for resources?
Proton Mail discloses user data leading to arrest in Spain
Link: https://restoreprivacy.com/protonmail-discloses-user-data-leading-to-arrest-in-spain/
Discussion: https://news.ycombinator.com/item?id=40280689
Microplastics are everywhere – including inside us. They’ve been detected in people’s blood, lungs, testicles, even THE PLACENTA.
The particles “shouldn't be there” & some chemical additives are known toxins. Sharing my new piece👇
https://fortune.com/well/article/microplastics-health-effects/
#environment #health #pollution #microplastics #medicine #chemicalsindustry #chemicals #plasticsindustry #plastics #plasticpollution #press #medtwitter
"AI" is one of those popular topics that I try to steer around. Yes, I know what an LLM is. Yes, I know what it does. I'm just not interested in the non-stop discourse around it.
I'm going to post this so it's out there, and I will mute responses, but, I thought it was worthy of throwing out there anyway.
My wife's a teacher, and she's been noticing her school laptop has really been dragging recently. She checked task manager and the culprit is "Artificial Intelligence(AI) for Windows" taking up tons of resources.
She checked in with her boss and, "Yes! We're so excited for this. We're going to be rolling out professional development trainings about how you can work with AI to develop all of your lessons going forward!" I guess it was only a matter of time until AI started teaching the kids, I just didn't realize that time was now.
No, my wife will not be using this to write her lessons, in case that's unclear.
While it's an interesting computer model, we already know this from actually finding them in people's lungs:
https://www.sciencedirect.com/science/article/pii/S0048969722020009
Moved full time to my other account @BE soon as this instance is still having issues.