bioRxiv @biorxivpreprint@qoto.org

TULIP - a Transformer based Unsupervised Language model for Interacting Peptides and T-cell receptors that generalizes to unseen epitopes https://www.biorxiv.org/content/10.1101/2023.07.19.549669v1?med=mas

A novel machine learning algorithm picks proteome signature to specifically identify cancer exosomes https://www.biorxiv.org/content/10.1101/2023.07.18.549557v1?med=mas

Random, de novo and conserved proteins: How structure and disorder predictors perform differently https://www.biorxiv.org/content/10.1101/2023.07.18.549582v1?med=mas

Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery https://www.biorxiv.org/content/10.1101/2023.07.19.549462v1?med=mas

A Template for Translational Bioinformatics: Facilitating Multimodal Data Analyses in Preclinical Models of Neurological Injury https://www.biorxiv.org/content/10.1101/2023.07.17.547582v1?med=mas

Microenvironment of metastatic site reveals key predictors of PD-1 blockade response in renal cell carcinoma https://www.biorxiv.org/content/10.1101/2023.07.17.548676v1?med=mas

Zero-Shot Transfer of Protein Sequence Likelihood Models to Thermostability Prediction https://www.biorxiv.org/content/10.1101/2023.07.17.549396v1?med=mas

Contextualizing protein representations using deep learning on protein networks and single-cell data https://www.biorxiv.org/content/10.1101/2023.07.18.549602v1?med=mas

Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages https://www.biorxiv.org/content/10.1101/2023.07.18.549537v1?med=mas

mEthAE: an Explainable AutoEncoder for methylation data https://www.biorxiv.org/content/10.1101/2023.07.18.549496v1?med=mas

PhageScanner, a flexible machine learning pipeline for automated bacteriophage genomic and metagenomic feature annotation https://www.biorxiv.org/content/10.1101/2023.07.17.549438v1?med=mas

Molecular Surface Descriptors to Predict Antibody Developability https://www.biorxiv.org/content/10.1101/2023.07.18.549448v1?med=mas

Measuring Connectivity in Linear Multivariate Processes with Penalized Regression Techniques https://www.biorxiv.org/content/10.1101/2023.07.17.549308v1?med=mas

A Phase Separation-Fortified Bi-Specific Adaptor for Conditional Tumor Killing https://www.biorxiv.org/content/10.1101/2023.07.19.549637v1?med=mas

Measuring RBC deformability and its heterogeneity using a fast microfluidic device https://www.biorxiv.org/content/10.1101/2023.07.18.549500v1?med=mas

Towards Modular Engineering of Cell Signalling: Topographically-Textured Microparticles Induce Osteogenesis via Activation of Canonical Hedgehog Signalling https://www.biorxiv.org/content/10.1101/2023.07.19.549481v1?med=mas

Response Surface Methodology-Based High-Throughput BioLector Fermentation Screening of Rosetta-2 for Enhanced Production of Insulin Variant: Towards Improved Production Efficiency https://www.biorxiv.org/content/10.1101/2023.07.19.549622v1?med=mas

A cautionary note on the use of N-acetylcysteine as a reactive oxygen species antagonist to assess copper mediated cell death. https://www.biorxiv.org/content/10.1101/2023.07.19.549632v1?med=mas

The activator domain of bacterial collagenases drives collagen recognition, unwinding and processing https://www.biorxiv.org/content/10.1101/2023.07.18.549520v1?med=mas

A systems-scale, integrated view of the ubiquitylation site occupancy and dynamics https://www.biorxiv.org/content/10.1101/2023.07.19.549470v1?med=mas