bioRxiv @biorxivpreprint@qoto.org

SpatialCTD: a large-scale TME spatial transcriptomic dataset to evaluate cell type deconvolution for immuno-oncology https://www.biorxiv.org/content/10.1101/2023.04.11.536333v1?med=mas

acorn: an R package for de novo variant analysis https://www.biorxiv.org/content/10.1101/2023.04.11.536422v1?med=mas

WormSwin: Instance segmentation of C. elegans using vision transformer https://www.biorxiv.org/content/10.1101/2023.04.10.536324v1?med=mas

A zero-agnostic model for copy number evolution in cancer https://www.biorxiv.org/content/10.1101/2023.04.10.536302v1?med=mas

Human pluripotent stem cells-derived Inner ear organoids recapitulate otic development in vitro. https://www.biorxiv.org/content/10.1101/2023.04.11.536448v1?med=mas

Liproxstatin-1 alleviates cartilage degradation by inhibiting chondrocyte ferroptosis in temporomandibular joint https://www.biorxiv.org/content/10.1101/2023.04.10.536321v1?med=mas

Palmitoylethanolamide shows limited efficacy in controlling cerebral cryptococcosis in vivo https://www.biorxiv.org/content/10.1101/2023.04.10.536237v1?med=mas

Astrocytic Neuroligins Are Not Required for Synapse Formation or a Normal Astrocyte Cytoarchitecture https://www.biorxiv.org/content/10.1101/2023.04.10.536254v1?med=mas

A benchmark of optimization solvers for genome-scale metabolic modeling https://www.biorxiv.org/content/10.1101/2023.04.11.536343v1?med=mas

Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis https://www.biorxiv.org/content/10.1101/2023.04.10.536233v1?med=mas

The RNA binding proteins LARP4A and LARP4B promote sarcoma and carcinoma growth and metastasis https://www.biorxiv.org/content/10.1101/2023.04.11.536377v1?med=mas

Engrailed-1 Promotes Pancreatic Cancer Metastasis https://www.biorxiv.org/content/10.1101/2023.04.10.536259v1?med=mas

Retrovirus-Like Gag Protein Arc/Arg3.1 is Involved in Extracellular-Vesicle-Mediated mRNA Transfer between Glioma Cells https://www.biorxiv.org/content/10.1101/2023.04.11.536339v1?med=mas

Rewiring of master transcription factor cistromes during high-grade serous ovarian cancer development https://www.biorxiv.org/content/10.1101/2023.04.11.536378v1?med=mas

PITAR, a DNA damage-inducible Cancer/Testis long noncoding RNA, inactivates p53 by binding and stabilizing TRIM28 mRNA https://www.biorxiv.org/content/10.1101/2023.04.11.536370v1?med=mas

Improved interpretability of bacterial genome-wide associations using gene cluster centric k-mers https://www.biorxiv.org/content/10.1101/2023.04.11.536385v1?med=mas

G2GSnake: A Snakemake workflow for host-pathogen genomic association studies https://www.biorxiv.org/content/10.1101/2023.04.11.536440v1?med=mas

Accurate prediction of in vivo protein abundances by coupling constraint-based modeling and machine learning https://www.biorxiv.org/content/10.1101/2023.04.11.536445v1?med=mas

Demultiplex2: robust sample demultiplexing for scRNA-seq https://www.biorxiv.org/content/10.1101/2023.04.11.536275v1?med=mas

Programmed ribosomal frameshifts, and how to find them https://www.biorxiv.org/content/10.1101/2023.04.10.536325v1?med=mas