bioRxiv @biorxivpreprint@qoto.org

Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification https://www.biorxiv.org/content/10.1101/2022.12.07.519534v1?med=mas

The Holdup Multiplex, an assay for high-throughput measurement of protein-ligand affinity constants using a mass-spectrometry readout https://www.biorxiv.org/content/10.1101/2022.12.08.519103v1?med=mas

BioNetGMMFit: a Parameter Estimation Tool for BioNetGen using Single-Cell Snapshot Data from Cell Populations Evolving over Time https://www.biorxiv.org/content/10.1101/2022.12.08.519526v1?med=mas

The phase separated CO2-fixing pyrenoid proteome determined by TurboID https://www.biorxiv.org/content/10.1101/2022.12.08.519652v1?med=mas

A compartmental model for Xylella fastidiosa diseases with explicit vector seasonal dynamics https://www.biorxiv.org/content/10.1101/2022.12.10.519878v1?med=mas

Pseudomonas isolates from ponds populated with duckweed prevent disease caused by pathogenic Pseudomonas species https://www.biorxiv.org/content/10.1101/2022.12.09.519836v1?med=mas

Rejuvenating Senescent Cells and Organisms with Only Ultrasound https://www.biorxiv.org/content/10.1101/2022.12.08.519320v1?med=mas

Mathematical modeling of ion homeostasis & cell volume stabilization: impact of ion transporters, impermeant molecules, & Donnan effect https://www.biorxiv.org/content/10.1101/2022.12.08.519683v1?med=mas

Developmental exposure to a real-life environmental chemical mixture alters testicular transcription factor expression in neonatal and pre-pubertal rams, with morphological changes persisting into adulthood https://www.biorxiv.org/content/10.1101/2022.12.09.519746v1?med=mas

Oncolytic adenovirus serotype 35 mediated tumor growth suppression via efficient activation and tumor infiltration of natural killer cells https://www.biorxiv.org/content/10.1101/2022.12.09.519732v1?med=mas

Correction of transposase sequence bias in ATAC-seq data with rule ensemble modeling https://www.biorxiv.org/content/10.1101/2022.12.08.519600v1?med=mas

Learning orientation-invariant representations enables accurate and robust morphologic profiling of cells and organelles https://www.biorxiv.org/content/10.1101/2022.12.08.519671v1?med=mas

RNA-Chrom: a manually-curated analytical database of RNA-chromatin interactome https://www.biorxiv.org/content/10.1101/2022.12.10.519346v1?med=mas

Towards a Clinically-based Common Coordinate Framework for the Human Gut Cell Atlas - The Gut Models https://www.biorxiv.org/content/10.1101/2022.12.08.519665v1?med=mas

Cell shape characterization, alignment and comparison using FlowShape https://www.biorxiv.org/content/10.1101/2022.12.08.519700v1?med=mas

md_harmonize: a Python package for atom-level harmonization of public metabolic data-bases https://www.biorxiv.org/content/10.1101/2022.12.08.519680v1?med=mas

SpLitteR: Diploid genome assembly using linked TELL-Seq reads and assembly graphs https://www.biorxiv.org/content/10.1101/2022.12.08.519233v1?med=mas

Foldcomp: a library and format for compressing and indexing large protein structure sets https://www.biorxiv.org/content/10.1101/2022.12.09.519715v1?med=mas

Snakeobjects: an object-oriented workflow management system https://www.biorxiv.org/content/10.1101/2022.12.08.519599v1?med=mas

Nanobody CDR3 mimetics enhance SOS1-catalyzed nucleotide exchange on RAS https://www.biorxiv.org/content/10.1101/2022.12.09.519747v1?med=mas