Hello #ScienceMastodon!
I'm a microscopist and image analyst at the BIOP imaging center at EPFL in Switzerland.
I'll be sharing mostly nerd stuff about #ImageJ/#FijiSc. Can't wait to see if the scientific mastodon community takes off!
So, let's get serious: can we share videos here? Let's find out:
Success! The video looks very nice, and one can even retrieve the original file with right-click + Save Video As... 👍
Awesome!
Quick video explanation: it looks a bit crude, but it's actually a dataset made of 100 stacked 'big' 2D images (~10kPix x 10kPix, 3 channels, 110Gb uncompressed). Each 2D image is non-linearly deformed to match an underlying 3D atlas (white outlines). There are ~ 120k degrees of freedom in the deformation field, which is computed on the fly, on a regular laptop, with three orthogonal synchronized views.
Want to know more ? Follow this account, or other #FijiSc wizards, like the ones I already found on mastodon: @albertcardona, @herrsaalfeld, and others!
