AI4Life @AI4Life@qoto.org

Non-stop week! Right after wrapping up the General Assembly, we jumped straight into #I2K2024. Huge thanks to Arrate Muñoz for leading the workshop on 'Building Your Own Chatbot for BioImage Analysis'

Our second invited speaker today is Álvaro López García coordinator of @AI4EOSC! We're almost ready to dive into our discussion on sustainability

We're excited to have Katrien Grunberg as an invited speaker at the #AI4Life General Assembly! She is presenting the #Bigpicture project, highlighting its focus on sustainability in digital pathology.

The BioImage Archive is a key partner in AI4Life, contributing significantly to the standardization of metadata for AI-ready datasets—a highly relevant topic in the bioimaging community! 🔥
Check out the preprint that details this work: https://arxiv.org/abs/2311.10443

User support is another great way to engage with the community! @ArrateMunoz invites everyone to fill out the feedback form for @bioimageio. If you've used a @bioimageio model, we’d love to hear your experience: https://bit.ly/bioimage-io-feedback

Open Calls & Challenges play a crucial role for AI4Life, as they allow us to engage directly with both the life sciences and computational communities.
Today, we received updates from Vera, Mehdi, and Joran. Stay tuned—news about our 3rd Open Call is coming soon!

@BSerranoSolano is leading the communication, outreach and training efforts in AI4Life. The communications plan is open and available for everybody:
https://doi.org/10.5281/zenodo.10948900

Check out also our website to learn how to engage with the project and much more!
https://ai4life.eurobioimaging.eu/

It's time to spotlight the Research Infrastructures driving innovation in AI4Life! @instructhub @EMPHASIS_EU @EMBRC_EU @EuOpenscreen share how they’re collaborating with the AI4Life community

@francescogatto, Project Officer at @REA_research, presents powerful tools for the dissemination and exploration of project results at the AI4Life General Assembly

Day 2 of the AI4Life General Assembly is underway! Our Project Manager, Dorothea Dörr, is keeping everything on track. She’s also highlighting the valuable support we’ve received from HorizonBooster to maximize the impact and exploitation of the project results

@HenriquesLab is responsible for 'Contributor Services' in AI4Life. Outcomes so far #DL4MicEverywhere, onboarding update #ZeroCostDL4Mic, the @bioimageio Colab

Wei Ouyang presents the updates by the work package on "User Services and Computing Infrastructure", highlighting the new uploader for models, standalone test run service and BioEngine for #HPC

(3/3) The last demo of today is the FAIR documentation. The @bioimageio Chatbot can help you with image analysis questions, general documentation about community partners, datasets at the BioImage Archive and much more!

With BioEngine and Hypha, AI4Life serves models in a scalable way (on-premise too). And! It is possible now to crowdsource image annotations using BioImage.IO Colab (2/3)

Demo 3 is titled "FAIR - not just a buzzword!" with (1/3)
the BioImage Archive
covering FAIR #AI-ready datasets

(3/3) from code, notebooks, containers

(2/3) from community partner tools (@BiaPyX, @ilastik_team, deepIcy, @deepImageJ)

Once the #AI models are uploaded to @bioimageio, how can they be used? 3⃣ options are showcased:
(1/3) from the web interface

Tomaz Vieira, Mehdi Seifi and Fynn Beuttenmueller start with the 1st Demo: How can the bioimage.io users create and upload models today via a user-friendly web interface and via API?

@florianjug and Anna Kreshuk now give an overview of all the accomplishments of the project in the past 2 years, looking forward to hearing more in the demos and updates from the project partners!