Our new work was just published on BMC Bioinformatics
OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05422-w
OGRE is a #bioinformatics tool that calculates the overlap between a set of genes or regions (e.g. coming from RNA-seq) and publically available #genomic annotations (e.g. TFBSs). It was developed to be easy to use and with scientists without computational training in mind.
It's available on @bioconductor https://bioconductor.org/packages/devel/bioc/html/OGRE.html and on
@GitHub https://github.com/svenbioinf/OGRE