arXiv Quantitative Biology @arxiv_bio@qoto.org

A multi-layer refined network model for the identification of essential proteins. (arXiv:2312.03773v1 [q-bio.MN]) http://arxiv.org/abs/2312.03773

Learning Genomic Sequence Representations using Graph Neural Networks over De Bruijn Graphs. (arXiv:2312.03865v1 [cs.LG]) http://arxiv.org/abs/2312.03865

Disentangling Fact from Grid Cell Fiction in Trained Deep Path Integrators. (arXiv:2312.03954v1 [q-bio.NC]) http://arxiv.org/abs/2312.03954

PerSival: Neural-network-based visualisation for pervasive continuum-mechanical simulations in musculoskeletal biomechanics. (arXiv:2312.03957v1 [q-bio.TO]) http://arxiv.org/abs/2312.03957

Efficiently Predicting Protein Stability Changes Upon Single-point Mutation with Large Language Models. (arXiv:2312.04019v1 [q-bio.BM]) http://arxiv.org/abs/2312.04019

DiscoBAX: Discovery of Optimal Intervention Sets in Genomic Experiment Design. (arXiv:2312.04064v1 [q-bio.QM]) http://arxiv.org/abs/2312.04064

Cell segmentation of in situ transcriptomics data using signed graph partitioning. (arXiv:2312.04181v1 [cs.IT]) http://arxiv.org/abs/2312.04181

Finding Interpretable Class-Specific Patterns through Efficient Neural Search. (arXiv:2312.04311v1 [cs.LG]) http://arxiv.org/abs/2312.04311

Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms. (arXiv:2312.04323v1 [q-bio.BM]) http://arxiv.org/abs/2312.04323

Scalable Knowledge Graph Construction and Inference on Human Genome Variants. (arXiv:2312.04423v1 [cs.AI]) http://arxiv.org/abs/2312.04423

High Performance Multiple Sequence Alignment Algorithms for Comparison of Microbial Genomes. (arXiv:2312.02994v1 [q-bio.GN]) http://arxiv.org/abs/2312.02994

A Waddington landscape for prototype learning in generalized Hopfield networks. (arXiv:2312.03012v1 [cond-mat.dis-nn]) http://arxiv.org/abs/2312.03012

Protein Language Model-Powered 3D Ligand Binding Site Prediction from Protein Sequence. (arXiv:2312.03016v1 [q-bio.QM]) http://arxiv.org/abs/2312.03016

Navigating the Synthetic Realm: Harnessing Diffusion-based Models for Laparoscopic Text-to-Image Generation. (arXiv:2312.03043v1 [eess.IV]) http://arxiv.org/abs/2312.03043

Deformable Registration of MRA Images with 4D Flow Images to Facilitate Accurate Estimation of Flow Properties within Blood Vessels. (arXiv:2312.03116v1 [q-bio.QM]) http://arxiv.org/abs/2312.03116

Deep Learning for Fast Inference of Mechanistic Models' Parameters. (arXiv:2312.03166v1 [cs.LG]) http://arxiv.org/abs/2312.03166

Enhancing Molecular Property Prediction via Mixture of Collaborative Experts. (arXiv:2312.03292v1 [cs.LG]) http://arxiv.org/abs/2312.03292

Modeling human activity-related spread of the spotted lanternfly (Lycorma delicatula) in the US. (arXiv:2312.03338v1 [q-bio.PE]) http://arxiv.org/abs/2312.03338

Latent State Space Extension for interpretable hybrid mechanistic models. (arXiv:2312.03427v1 [q-bio.QM]) http://arxiv.org/abs/2312.03427

Molecule Joint Auto-Encoding: Trajectory Pretraining with 2D and 3D Diffusion. (arXiv:2312.03475v1 [cs.LG]) http://arxiv.org/abs/2312.03475