Ferroptosis is a form of cell death discovered in recent years, induced by excessive peroxidation of phospholipids. Glutathione peroxidase 4 (GPx4) is an intracellular enzyme that can repair the peroxidized phospholipids on membranes, thus regulating ferroptosis. By combining multiscale molecular dynamics (MD) simulations and experimental assays, we investigate the binding mechanisms of GPx4 on membranes. Using coarse-grained MD simulations, we found that L130 and its adjacent residues on GPx4 can form a stable and unique binding interface with PE/PS-rich and peroxidized membranes. Subsequent all-atom MD simulations verified the stability of the binding interface. The critical residue on the interface, L130, was inserted deeply into the membrane as a hydrophobic anchor and guided the reaction center toward the membrane surface. Enzyme activity assays and in vitro cell experiments showed that mutations of L130 resulted in weaker activities of the enzyme, probably caused by non-functional binding modes of GPx4 on membranes, as revealed by in silico simulations. This study highlights the crucial role of the hydrophobic residue, L130, in the proper anchoring of GPx4 on membranes, the first step of its membrane-repairing function.