arXiv Quantitative Biology @arxiv_bio@qoto.org

Modelling Biological and Ecological Systems with the Calculus of Wrapped Compartments. (arXiv:2212.07105v1 [q-bio.QM]) http://arxiv.org/abs/2212.07105

Path separation of dissipation-corrected targeted molecular dynamics simulations of protein-ligand unbinding. (arXiv:2212.07154v1 [cond-mat.soft]) http://arxiv.org/abs/2212.07154

Analytical description of memory loss based on neuronal synaptic strength. (arXiv:2212.07225v1 [q-bio.NC]) http://arxiv.org/abs/2212.07225

Large-Scale Chemical Language Representations Capture Molecular Structure and Properties. (arXiv:2106.09553v3 [cs.LG] UPDATED) http://arxiv.org/abs/2106.09553

Accounting for Temporal Variability in Functional Magnetic Resonance Imaging Improves Prediction of Intelligence. (arXiv:2211.07429v2 [q-bio.NC] UPDATED) http://arxiv.org/abs/2211.07429

Utilizing Mutations to Evaluate Interpretability of Neural Networks on Genomic Data. (arXiv:2212.06151v1 [q-bio.GN]) http://arxiv.org/abs/2212.06151

A minimal model for liquid-liquid phase separation and aging of chemically reactive macromolecular mixtures. (arXiv:2212.06217v1 [cond-mat.soft]) http://arxiv.org/abs/2212.06217

Stochastic Modeling of Biofilm Formation with Bacterial Quorum Sensing. (arXiv:2212.06269v1 [q-bio.QM]) http://arxiv.org/abs/2212.06269

A Dynamic Theory of the Area of Distribution. (arXiv:2212.06308v1 [q-bio.PE]) http://arxiv.org/abs/2212.06308

Mixed Supervision of Histopathology Improves Prostate Cancer Classification from MRI. (arXiv:2212.06336v1 [eess.IV]) http://arxiv.org/abs/2212.06336

Numerical Stability of DeepGOPlus Inference. (arXiv:2212.06361v1 [cs.LG]) http://arxiv.org/abs/2212.06361

Tangent functional connectomes uncover more unique phenotypic traits. (arXiv:2212.06394v1 [q-bio.NC]) http://arxiv.org/abs/2212.06394

Xylem embolism and bubble formation during freezing suggest complex dynamics of pressure-tension in Betula pendula stems. (arXiv:2212.06490v1 [q-bio.TO]) http://arxiv.org/abs/2212.06490

Subjective Sleepiness Dynamics Dataset (SSDD) Presentation: the Study of Two Scales Consistency. (arXiv:2212.06501v1 [q-bio.NC]) http://arxiv.org/abs/2212.06501

Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics. (arXiv:2212.06505v1 [q-bio.QM]) http://arxiv.org/abs/2212.06505

Practical and scalable simulations of non-Markovian stochastic processes. (arXiv:2212.05059v1 [q-bio.QM]) http://arxiv.org/abs/2212.05059

Integrating multi-type aberrations from DNA and RNA through dynamic mapping gene space for subtype-specific breast cancer driver discovery. (arXiv:2212.05064v1 [q-bio.QM]) http://arxiv.org/abs/2212.05064

FMO Study of the Interaction Energy between Human Estrogen Receptor $\alpha$ and Selected Ligands. (arXiv:2212.05089v1 [q-bio.BM]) http://arxiv.org/abs/2212.05089

Reconstructing gene expression and knockout effect scores from DNA mutation (Mut2Ex): methodology and application to cancer prediction problems. (arXiv:2212.05170v1 [q-bio.GN]) http://arxiv.org/abs/2212.05170

Information retrieval in single cell chromatin analysis using TF-IDF transformation methods. (arXiv:2212.05184v1 [q-bio.GN]) http://arxiv.org/abs/2212.05184