arXiv Quantitative Biology @arxiv_bio@qoto.org

Docking Peptides into HIV/FIV Protease with Deep Learning and Focused Peptide Docking Methods. (arXiv:2310.09529v1 [q-bio.QM]) http://arxiv.org/abs/2310.09529

ARTree: A Deep Autoregressive Model for Phylogenetic Inference. (arXiv:2310.09553v1 [q-bio.PE]) http://arxiv.org/abs/2310.09553

Graph Neural Network approaches for single-cell data: A recent overview. (arXiv:2310.09561v1 [cs.LG]) http://arxiv.org/abs/2310.09561

Tree size distribution as the stationary limit of an evolutionary master equation. (arXiv:2310.09595v1 [q-bio.PE]) http://arxiv.org/abs/2310.09595

Generative artificial intelligence for de novo protein design. (arXiv:2310.09685v1 [cs.LG]) http://arxiv.org/abs/2310.09685

Genome hybridization: A universal way for the origin and diversification of organelles as well as the origin and speciation of eukaryotes. (arXiv:2310.09758v1 [q-bio.OT]) http://arxiv.org/abs/2310.09758

Mathematical Analysis of the role of Information on the Dynamics of Typhoid Fever. (arXiv:2310.09825v1 [math.DS]) http://arxiv.org/abs/2310.09825

Individual Variation Affects Outbreak Magnitude and Predictability in an Extended Multi-Pathogen SIR Model of Pigeons Vising Dairy Farms. (arXiv:2310.08613v1 [q-bio.PE]) http://arxiv.org/abs/2310.08613

Noise driven phase transitions in eco-evolutionary systems. (arXiv:2310.08735v1 [q-bio.PE]) http://arxiv.org/abs/2310.08735

Splicing Up Your Predictions with RNA Contrastive Learning. (arXiv:2310.08738v1 [cs.LG]) http://arxiv.org/abs/2310.08738

PhyloGFN: Phylogenetic inference with generative flow networks. (arXiv:2310.08774v1 [q-bio.PE]) http://arxiv.org/abs/2310.08774

Neural Dysfunction Underlying Working Memory Processing at Different Stages of the Illness Course in Schizophrenia:A Comparative Meta-analysis. (arXiv:2310.08801v1 [q-bio.NC]) http://arxiv.org/abs/2310.08801

How enlightened self-interest guided global vaccine sharing benefits all: a modelling study. (arXiv:2310.08913v1 [q-bio.PE]) http://arxiv.org/abs/2310.08913

A Deep Neural Network -- Mechanistic Hybrid Model to Predict Pharmacokinetics in Rat. (arXiv:2310.09167v1 [q-bio.QM]) http://arxiv.org/abs/2310.09167

Shedding light on social learning. (arXiv:2310.09175v1 [q-bio.NC]) http://arxiv.org/abs/2310.09175

Neural activity in quarks language: Lattice Field Theory for a network of real neurons. (arXiv:2310.09178v1 [q-bio.NC]) http://arxiv.org/abs/2310.09178

Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models. (arXiv:2310.09252v1 [q-bio.QM]) http://arxiv.org/abs/2310.09252

Design Patterns of Biological Cells. (arXiv:2310.07880v1 [q-bio.MN]) http://arxiv.org/abs/2310.07880

Recurrent networks recognize patterns with low-dimensional oscillations. (arXiv:2310.07908v1 [q-bio.NC]) http://arxiv.org/abs/2310.07908

Representing and extending ensembles of parsimonious evolutionary histories with a directed acyclic graph. (arXiv:2310.07919v1 [q-bio.PE]) http://arxiv.org/abs/2310.07919