arXiv Quantitative Biology @arxiv_bio@qoto.org

Sliced Denoising: A Physics-Informed Molecular Pre-Training Method. (arXiv:2311.02124v1 [q-bio.BM]) http://arxiv.org/abs/2311.02124

A Systematic Review of Deep Graph Neural Networks: Challenges, Classification, Architectures, Applications & Potential Utility in Bioinformatics. (arXiv:2311.02127v1 [cs.LG]) http://arxiv.org/abs/2311.02127

A Primer for the Walsh Transform. (arXiv:2311.02177v1 [q-bio.PE]) http://arxiv.org/abs/2311.02177

An algorithmic framework for synthetic cost-aware decision making in molecular design. (arXiv:2311.02187v1 [q-bio.QM]) http://arxiv.org/abs/2311.02187

Active risk aversion in SIS epidemics on networks. (arXiv:2311.02204v1 [q-bio.PE]) http://arxiv.org/abs/2311.02204

The Case for Controls: Identifying outbreak risk factors through case-control comparisons. (arXiv:2311.02226v1 [q-bio.PE]) http://arxiv.org/abs/2311.02226

Modeling Cancer Progression: An Integrated Workflow Extending Data-Driven Kinetic Models to Bio-Mechanical PDE Models. (arXiv:2311.02232v1 [q-bio.QM]) http://arxiv.org/abs/2311.02232

Learning Time-Invariant Representations for Individual Neurons from Population Dynamics. (arXiv:2311.02258v1 [q-bio.NC]) http://arxiv.org/abs/2311.02258

Multivariate brain-cognition associations in euthymic bipolar disorder. (arXiv:2311.01543v1 [q-bio.NC]) http://arxiv.org/abs/2311.01543

Topological inference on brain networks across subtypes of post-stroke aphasia. (arXiv:2311.01625v1 [stat.ME]) http://arxiv.org/abs/2311.01625

The Role of Soil Surface in a Sustainable Semiarid Ecosystem. (arXiv:2311.01648v1 [q-bio.PE]) http://arxiv.org/abs/2311.01648

Switching particle systems for foraging ants showing phase transitions in path selections. (arXiv:2311.01946v1 [cond-mat.stat-mech]) http://arxiv.org/abs/2311.01946

Eigenvalue spectra of finely structured random matrices. (arXiv:2311.02006v1 [cond-mat.dis-nn]) http://arxiv.org/abs/2311.02006

MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation. (arXiv:2311.02029v1 [q-bio.GN]) http://arxiv.org/abs/2311.02029

On minimizers and convolutional filters: theoretical connections and applications to genome analysis. (arXiv:2111.08452v5 [cs.LG] UPDATED) http://arxiv.org/abs/2111.08452

Neural modulation enhancement using connectivity-based EEG neurofeedback with simultaneous fMRI for emotion regulation. (arXiv:2204.01087v3 [q-bio.NC] UPDATED) http://arxiv.org/abs/2204.01087

A mathematical model of Bacteroides thetaiotaomicron, Methanobrevibacter smithii, and Eubacterium rectale interactions in the human gut. (arXiv:2303.12026v2 [q-bio.PE] UPDATED) http://arxiv.org/abs/2303.12026

Fractional Denoising for 3D Molecular Pre-training. (arXiv:2307.10683v2 [q-bio.QM] UPDATED) http://arxiv.org/abs/2307.10683

Tipping Points of Evolving Epidemiological Networks: Machine Learning-Assisted, Data-Driven Effective Modeling. (arXiv:2311.00797v1 [cs.LG]) http://arxiv.org/abs/2311.00797

Adaptive Dynamics of Diverging Fitness Optima. (arXiv:2311.00829v1 [math.AP]) http://arxiv.org/abs/2311.00829