arXiv Quantitative Biology @arxiv_bio@qoto.org

Continued domain-specific pre-training of protein language models for pMHC-I binding prediction https://arxiv.org/abs/2507.13077 #qbioQM

Life Finds A Way: Emergence of Cooperative Structures in Adaptive Threshold Networks https://arxiv.org/abs/2507.13253 #qbioPE #csSI

Assay2Mol: large language model-based drug design using BioAssay context https://arxiv.org/abs/2507.12574 #qbioQM #cs.LG #cs.AI

MiNAA-WebApp: A Web-Based Tool for the Visualization and Analysis of Microbiome Networks https://arxiv.org/abs/2507.08822 #qbioMN

Generation of structure-guided pMHC-I libraries using Diffusion Models https://arxiv.org/abs/2507.08902 #qbioQM #csAI

AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model https://arxiv.org/abs/2507.08920 #qbioBM #csAI

CNeuroMod-THINGS, a densely-sampled fMRI dataset for visual neuroscience https://arxiv.org/abs/2507.09024 #qbioNC #csCV

From Classical Machine Learning to Emerging Foundation Models: Review on Multimodal Data Integration for Cancer Research https://arxiv.org/abs/2507.09028 #qbioQM #csAI

A Phase-field Model for Apoptotic Cell Death https://arxiv.org/abs/2507.09038 #qbioCB

Co-evolutionary Balance State of the Autism inter-Brain Network: A Neurofunctional Framework for Biomarker Discovery https://arxiv.org/abs/2507.09045 #physicsbioph #qbioNC

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins https://arxiv.org/abs/2507.09054 #qbioBM #csLG

Advancing Structure Prediction of Biomolecular Interaction via Contact-Guided Sampling with HelixFold-S1 https://arxiv.org/abs/2507.09251 #qbioBM

Degeneracy of Zero-one Reaction Networks https://arxiv.org/abs/2507.09272 #qbioMN #mathDS

Unraveling the Potential of Diffusion Models in Small Molecule Generation https://arxiv.org/abs/2507.08005 #qbioBM #csAI #csLG

Topological Sequence Analysis of Genomes: Category Approaches https://arxiv.org/abs/2507.08043 #qbioGN #mathAT

MCPmed: A Call for MCP-Enabled Bioinformatics Web Services for LLM-Driven Discovery https://arxiv.org/abs/2507.08055 #qbioOT

HybridQC: Machine Learning-Augmented Quality Control for Single-Cell RNA-seq Data https://arxiv.org/abs/2507.08058 #qbioGN

MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection https://arxiv.org/abs/2507.08060 #qbioGN

AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data https://arxiv.org/abs/2507.08062 #qbioGN

AI for NONMEM Coding in Pharmacometrics Research and Education: Shortcut or Pitfall? https://arxiv.org/abs/2507.08144 #qbioOT