arXiv Quantitative Biology @arxiv_bio@qoto.org

Gaussian Mixture Model-Based Focused Refinement for Enhanced Flexible Structure Determination in CryoEM and CryoET https://arxiv.org/abs/2605.30518 #qbioQM

High-Fidelity 3D Simulator for Synthetic fNIRS Data Generation https://arxiv.org/abs/2605.30552 #qbioNC

Obesity and Sociodemographic Factors in Luminal Breast Cancer https://arxiv.org/abs/2605.30591 #qbioQM

The Geometry of Activity Cliffs: Representation Dependence and Multi-Scale Characterization of Activity Landscapes https://arxiv.org/abs/2605.30831 #physicschemph #qbioQM #csLG

Extended predictive coding framework as variational free-energy minimisation under exponential-family assumption https://arxiv.org/abs/2605.30882 #qbioNC

Coordination without communication: beyond optimisation and geometric Brownian motion https://arxiv.org/abs/2605.30950 #physicssocph #qbioPE #statAP

AMix-2: Establishing Protein as a Native Modality in Large Language Models https://arxiv.org/abs/2605.30963 #qbioBM #csAI

Ligand-Conditioned Discrete Diffusion for Protein Sequence-Structure Co-Design https://arxiv.org/abs/2605.27413 #qbioBM #csAI

Real-Time In Silico Modeling of Postprandial Macronutrient Kinetics: A Validated Computational Engine for Nutrition Research and Digital Health https://arxiv.org/abs/2605.27459 #qbioOT #csCE

BIRDS: Characterizing and Understanding Biodiversity Impact of Large Language Model Serving https://arxiv.org/abs/2605.27480 #qbioOT #csAI #csCY

Cycle Based Computational Pipeline for Extracting Instantaneous Whisking Frequency https://arxiv.org/abs/2605.27573 #qbioQM

ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes https://arxiv.org/abs/2605.27677 #qbioPE

Exploratory Experience Shapes the Geometry of Predictive Representations https://arxiv.org/abs/2605.27929 #qbioNC #csLG

PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation https://arxiv.org/abs/2605.28545 #qbioPE

Widespread quasi-steady state assumption in biological interaction modeling mischaracterizes system transitions https://arxiv.org/abs/2605.28652 #qbioQM #nlinCD #qbioPE #qbioSC

Misalignment Between Backpropagation and the Hierarchy of Brain Responses to Images https://arxiv.org/abs/2605.28693 #qbioNC #csAI

EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Models https://arxiv.org/abs/2605.26910 #qbioNC #cs.LG #cs.AI

What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction https://arxiv.org/abs/2605.26183 #qbioQM #csLG

Fixation location in structured populations https://arxiv.org/abs/2605.26411 #qbioPE

Random neural networks match observed dimensionality of neural population recordings and motivate stronger experimental tests https://arxiv.org/abs/2605.26551 #condmatdisnn #physicsbioph #qbioNC