arXiv Quantitative Biology @arxiv_bio@qoto.org

DNABERT-2: Fine-Tuning a Genomic Language Model for Colorectal Gene Enhancer Classification https://arxiv.org/abs/2509.25274 #qbioGN #csAI #csLG

Mathematical Framework for Epidemic Dynamics: Optimal Control and Global Sensitivity Analysis https://arxiv.org/abs/2509.25291 #qbioPE #mathDS

Computational Drug Repurposing for Alzheimer's Disease via Sheaf Theoretic Population-Scale Analysis of snRNA-seq Data https://arxiv.org/abs/2509.25417 #qbioMN

Neural Receptive Fields, Stimulus Space Embedding and Effective Geometry of Scale-Free Networks https://arxiv.org/abs/2509.25453 #qbioNC

Discontinuous Epitope Fragments as Sufficient Target Templates for Efficient Binder Design https://arxiv.org/abs/2509.25479 #qbioBM #csAI

A Mathematical Model of Hematopoiesis during Systemic Infection https://arxiv.org/abs/2509.25485 #qbioCB

Load Transfer along Continuous Collagen Fibers Reduces the Importance of Wall Thickness Variations https://arxiv.org/abs/2509.25501 #qbioTO

Continuum models describing probabilistic motion of tagged agents in exclusion processes https://arxiv.org/abs/2509.25554 #qbioPE

GenVarFormer: Predicting gene expression from long-range mutations in cancer https://arxiv.org/abs/2509.25573 #qbioGN

What does the tree of life look like as it grows? Evolution and the multifractality of time https://arxiv.org/abs/2509.25615 #physicsbioph #qbioPE #mathDS #mathPR

Assessing metadata privacy in neuroimaging https://arxiv.org/abs/2509.15278 #qbioOT #eessIV #csCR #csCY

Epidemic amplification by correlated superspreading https://arxiv.org/abs/2509.15338 #qbioPE

Incorporating Visual Cortical Lateral Connection Properties into CNN: Recurrent Activation and Excitatory-Inhibitory Separation https://arxiv.org/abs/2509.15460 #qbioNC #csAI #csCV

Polynomial Equivalence of Extended Chemical Reaction Models https://arxiv.org/abs/2509.15584 #qbioMN #csCC

siDPT: siRNA Efficacy Prediction via Debiased Preference-Pair Transformer https://arxiv.org/abs/2509.15664 #qbioGN #eessSP #qbioQM

A Visual Discrete Event-based Simulator for Protection of Plants against Herbivores Employed as Computational Optimization Game https://arxiv.org/abs/2509.15787 #qbioPE

Overcoming Output Dimension Collapse: How Sparsity Enables Zero-shot Brain-to-Image Reconstruction at Small Data Scales https://arxiv.org/abs/2509.15832 #qbioNC

Changes in Liver Fibrosis in Patients with Chronic Hepatitis B Treated with Pegylated Interferon Combined with Oral Antiviral Agents: A 48-Week Observation from a Prospective Cohort Study https://arxiv.org/abs/2509.15854 #qbioTO

The evolution of asymmetrical regulation of physiology is central to aging https://arxiv.org/abs/2509.15911 #qbioPE

A Hypothesis-First Framework for Mechanistic Model Evaluation and Selection in Neuroimaging https://arxiv.org/abs/2509.16070 #qbioNC #qbioQM