arXiv Quantitative Biology @arxiv_bio@qoto.org

Cycle Based Computational Pipeline for Extracting Instantaneous Whisking Frequency https://arxiv.org/abs/2605.27573 #qbioQM

ESL-PSC Toolkit: a graphical software environment for linking shared genetic changes to convergent phenotypes https://arxiv.org/abs/2605.27677 #qbioPE

Exploratory Experience Shapes the Geometry of Predictive Representations https://arxiv.org/abs/2605.27929 #qbioNC #csLG

PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation https://arxiv.org/abs/2605.28545 #qbioPE

Widespread quasi-steady state assumption in biological interaction modeling mischaracterizes system transitions https://arxiv.org/abs/2605.28652 #qbioQM #nlinCD #qbioPE #qbioSC

Misalignment Between Backpropagation and the Hierarchy of Brain Responses to Images https://arxiv.org/abs/2605.28693 #qbioNC #csAI

EEG-FM-Audit: A Systematic Evaluation and Analysis Pipeline for EEG Foundation Models https://arxiv.org/abs/2605.26910 #qbioNC #cs.LG #cs.AI

What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction https://arxiv.org/abs/2605.26183 #qbioQM #csLG

Fixation location in structured populations https://arxiv.org/abs/2605.26411 #qbioPE

Random neural networks match observed dimensionality of neural population recordings and motivate stronger experimental tests https://arxiv.org/abs/2605.26551 #condmatdisnn #physicsbioph #qbioNC

Recognizing Level-k-Based Phylogenetic Networks is NP-Complete https://arxiv.org/abs/2605.26852 #qbioPE #csDM

The Sensation Modulating Network:Haltability as the architectural ground for object-directed phenomenology https://arxiv.org/abs/2605.26856 #qbioNC #csAI #csRO

SpCAST: Decoding spatial transcriptomics at single-cell resolution with fast and interpretable analysis https://arxiv.org/abs/2605.26904 #qbioCB

Logistic dynamics of small populations with demographic stochasticity https://arxiv.org/abs/2605.27100 #qbioPE

Co-folding model guided by structural proteomics https://arxiv.org/abs/2605.26192 #qbioBM #cs.LG #cs.AI

Self-Improvement Imitation with Biologically Guided Search for Protein Design Under Oracle Budgets https://arxiv.org/abs/2605.26690 #qbioQM #cs.LG #cs.AI

Biophoton Emission from Palm during Meditation: A Multi-Method Complexity Analysis https://arxiv.org/abs/2605.26758 #physicsbioph #qbioOT

A Machine Learning Framework for EEG-Based Prediction of Treatment Efficacy in Chronic Neck Pain https://arxiv.org/abs/2605.16326 #qbioQM #eessSP #csAI #csLG

Retrieval and competition: how a protein foundation model starts a protein https://arxiv.org/abs/2605.16331 #qbioBM #csAI

Microdroplets Fail to Retain Exhaled Volatile Biomarkers within a Single Breath https://arxiv.org/abs/2605.16356 #physicsmedph #qbioQM