arXiv Quantitative Biology @arxiv_bio@qoto.org

Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets. (arXiv:2205.07249v1 [cs.LG]) http://arxiv.org/abs/2205.07249

Backward bifurcation, basic reinfection number and robustness of a SEIRE epidemic model with reinfection. (arXiv:2205.07258v1 [q-bio.PE]) http://arxiv.org/abs/2205.07258

3DLinker: An E(3) Equivariant Variational Autoencoder for Molecular Linker Design. (arXiv:2205.07309v1 [cs.LG]) http://arxiv.org/abs/2205.07309

Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations. (arXiv:2205.07360v1 [q-bio.MN]) http://arxiv.org/abs/2205.07360

Chetaev Instability Framework for Kinetostatic Compliance-Based Protein Unfolding. (arXiv:2205.07375v1 [eess.SY]) http://arxiv.org/abs/2205.07375

The interactions of SARS-CoV-2 with co-circulating pathogens: Epidemiological implications and current knowledge gaps. (arXiv:2205.07553v1 [q-bio.PE]) http://arxiv.org/abs/2205.07553

Bayesian learning of effective chemical master equations in crowded intracellular conditions. (arXiv:2205.06268v1 [q-bio.QM]) http://arxiv.org/abs/2205.06268

Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines. (arXiv:2205.06313v1 [q-bio.MN]) http://arxiv.org/abs/2205.06313

SODA: a TypeScript/JavaScript Library for Visualizing Biological Sequence Annotation. (arXiv:2205.06349v1 [q-bio.GN]) http://arxiv.org/abs/2205.06349

Counting unique molecular identifiers in sequencing using a decomposable multitype branching process with immigration. (arXiv:2205.06405v1 [q-bio.QM]) http://arxiv.org/abs/2205.06405

Exponential Integral Solutions for Fixation Time in Wright-Fisher Model With Selection. (arXiv:2205.06480v1 [q-bio.PE]) http://arxiv.org/abs/2205.06480

Simplex Closing Probabilities in Directed Graphs. (arXiv:2205.06520v1 [math.CO]) http://arxiv.org/abs/2205.06520

Image and graph convolution networks improve microbiome-based machine learning accuracy. (arXiv:2205.06525v1 [q-bio.QM]) http://arxiv.org/abs/2205.06525

Subspace orthogonalization as a mechanism for binding values to space. (arXiv:2205.06769v1 [q-bio.NC]) http://arxiv.org/abs/2205.06769

Data-driven deep learning algorithms for time-varying infection rates of COVID-19 and mitigation measures. (arXiv:2104.02603v3 [q-bio.PE] UPDATED) http://arxiv.org/abs/2104.02603

Cell motility as an energy minimization process. (arXiv:2112.10083v2 [physics.bio-ph] UPDATED) http://arxiv.org/abs/2112.10083

RITA: a Study on Scaling Up Generative Protein Sequence Models. (arXiv:2205.05789v1 [q-bio.QM]) http://arxiv.org/abs/2205.05789

Configurational entropy, transition rates, and optimal interactions for rapid folding in coarse-grained model proteins. (arXiv:2205.05799v1 [cond-mat.soft]) http://arxiv.org/abs/2205.05799

Hormonal Factors Moderate the Associations Between Vascular Risk Factors and White Matter Hyperintensities. (arXiv:2205.05876v1 [q-bio.NC]) http://arxiv.org/abs/2205.05876

SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping. (arXiv:2205.05883v1 [cs.AR]) http://arxiv.org/abs/2205.05883