arXiv Quantitative Biology @arxiv_bio@qoto.org

CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics data. (arXiv:2311.04567v1 [q-bio.CB]) http://arxiv.org/abs/2311.04567

On impact of oxygen distribution on tumor necrotic region: A Multiphase Model. (arXiv:2311.03394v1 [q-bio.TO]) http://arxiv.org/abs/2311.03394

Visualizing DNA reaction trajectories with deep graph embedding approaches. (arXiv:2311.03409v1 [q-bio.BM]) http://arxiv.org/abs/2311.03409

DP-DCAN: Differentially Private Deep Contrastive Autoencoder Network for Single-cell Clustering. (arXiv:2311.03410v1 [cs.LG]) http://arxiv.org/abs/2311.03410

ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings. (arXiv:2311.03411v1 [q-bio.QM]) http://arxiv.org/abs/2311.03411

Hopfield-Enhanced Deep Neural Networks for Artifact-Resilient Brain State Decoding. (arXiv:2311.03421v1 [q-bio.NC]) http://arxiv.org/abs/2311.03421

ProPath: Disease-Specific Protein Language Model for Variant Pathogenicity. (arXiv:2311.03429v1 [q-bio.GN]) http://arxiv.org/abs/2311.03429

Predicting Age from White Matter Diffusivity with Residual Learning. (arXiv:2311.03500v1 [eess.IV]) http://arxiv.org/abs/2311.03500

Astrocytes as a mechanism for meta-plasticity and contextually-guided network function. (arXiv:2311.03508v1 [q-bio.NC]) http://arxiv.org/abs/2311.03508

Brain Networks and Intelligence: A Graph Neural Network Based Approach to Resting State fMRI Data. (arXiv:2311.03520v1 [cs.LG]) http://arxiv.org/abs/2311.03520

A seven-step guide to spatial, agent-based modelling of tumour evolution. (arXiv:2311.03569v1 [q-bio.QM]) http://arxiv.org/abs/2311.03569

Deciphering circulating tumor cells binding in a microfluidic system thanks to a parameterized mathematical model. (arXiv:2311.02091v1 [q-bio.TO]) http://arxiv.org/abs/2311.02091

Static Virus Spread Algorithm for DNA Sequence Design. (arXiv:2311.02120v1 [cs.ET]) http://arxiv.org/abs/2311.02120

Sliced Denoising: A Physics-Informed Molecular Pre-Training Method. (arXiv:2311.02124v1 [q-bio.BM]) http://arxiv.org/abs/2311.02124

A Systematic Review of Deep Graph Neural Networks: Challenges, Classification, Architectures, Applications & Potential Utility in Bioinformatics. (arXiv:2311.02127v1 [cs.LG]) http://arxiv.org/abs/2311.02127

A Primer for the Walsh Transform. (arXiv:2311.02177v1 [q-bio.PE]) http://arxiv.org/abs/2311.02177

An algorithmic framework for synthetic cost-aware decision making in molecular design. (arXiv:2311.02187v1 [q-bio.QM]) http://arxiv.org/abs/2311.02187

Active risk aversion in SIS epidemics on networks. (arXiv:2311.02204v1 [q-bio.PE]) http://arxiv.org/abs/2311.02204

The Case for Controls: Identifying outbreak risk factors through case-control comparisons. (arXiv:2311.02226v1 [q-bio.PE]) http://arxiv.org/abs/2311.02226

Modeling Cancer Progression: An Integrated Workflow Extending Data-Driven Kinetic Models to Bio-Mechanical PDE Models. (arXiv:2311.02232v1 [q-bio.QM]) http://arxiv.org/abs/2311.02232