arXiv Quantitative Biology @arxiv_bio@qoto.org

ProteinBench: A Holistic Evaluation of Protein Foundation Models https://arxiv.org/abs/2409.06744 #qbioQM #qbioBM #csAI #csLG

Universal scale-free representations in human visual cortex https://arxiv.org/abs/2409.06843 #qbioNC #qbioQM

Why aphids are not pests in cacao? An approach based on a predator-prey model with aging https://arxiv.org/abs/2409.06861 #physicsdataan #qbioPE

On the design and stability of cancer adaptive therapy cycles: deterministic and stochastic models https://arxiv.org/abs/2409.06867 #qbioPE #qbioTO

Some bounds on positive equilibria in mass action networks https://arxiv.org/abs/2409.06877 #qbioMN #mathAG

Joint trajectory and network inference via reference fitting https://arxiv.org/abs/2409.06879 #qbioQM #statML #csLG

Modelling the effect of antibody depletion on dose-response behavior for common immunostaining protocols https://arxiv.org/abs/2409.06895 #qbioQM

Analysis of Potential Biases and Validity of Studies Using Multiverse Approaches to Assess the Impacts of Government Responses to Epidemics https://arxiv.org/abs/2409.06930 #qbioOT

The microbiome science of composting and human excrement composting: a review https://arxiv.org/abs/2409.07376 #qbioQM

Spatial structure facilitates evolutionary rescue by cost-free drug resistance https://arxiv.org/abs/2409.07377 #physicsbioph #qbioPE

Syntax-Guided Procedural Synthesis of Molecules https://arxiv.org/abs/2409.05873 #physicschemph #qbioBM #csLG

Unlocking Potential Binders: Multimodal Pretraining DEL-Fusion for Denoising DNA-Encoded Libraries https://arxiv.org/abs/2409.05916 #qbioQM #qbioBM #csAI #csLG

Hierarchical novel class discovery for single-cell transcriptomic profiles https://arxiv.org/abs/2409.05937 #qbioGN #qbioQM #csLG

DeepFM-Crispr: Prediction of CRISPR On-Target Effects via Deep Learning https://arxiv.org/abs/2409.05938 #qbioQM #csAI #csLG

Mapping Evolution of Molecules Across Biochemistry with Assembly Theory https://arxiv.org/abs/2409.05993 #qbioPE

Reconstructing semi-directed level-1 networks using few quarnets https://arxiv.org/abs/2409.06034 #qbioPE #mathCO #csDS

AbGPT: De Novo Antibody Design via Generative Language Modeling https://arxiv.org/abs/2409.06090 #qbioBM

Understanding how chromatin folding and enzyme competition affect rugged epigenetic landscapes https://arxiv.org/abs/2409.06116 #qbioQM #qbioMN

Mechanistic-statistical model for the expansion of ash dieback https://arxiv.org/abs/2409.06273 #qbioPE #statAP

When can few-species models describe dynamics within a complex community? https://arxiv.org/abs/2409.06379 #qbioPE