arXiv Quantitative Biology @arxiv_bio@qoto.org

Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins https://arxiv.org/abs/2507.09054 #qbioBM #csLG

Advancing Structure Prediction of Biomolecular Interaction via Contact-Guided Sampling with HelixFold-S1 https://arxiv.org/abs/2507.09251 #qbioBM

Degeneracy of Zero-one Reaction Networks https://arxiv.org/abs/2507.09272 #qbioMN #mathDS

Unraveling the Potential of Diffusion Models in Small Molecule Generation https://arxiv.org/abs/2507.08005 #qbioBM #csAI #csLG

Topological Sequence Analysis of Genomes: Category Approaches https://arxiv.org/abs/2507.08043 #qbioGN #mathAT

MCPmed: A Call for MCP-Enabled Bioinformatics Web Services for LLM-Driven Discovery https://arxiv.org/abs/2507.08055 #qbioOT

HybridQC: Machine Learning-Augmented Quality Control for Single-Cell RNA-seq Data https://arxiv.org/abs/2507.08058 #qbioGN

MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection https://arxiv.org/abs/2507.08060 #qbioGN

AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data https://arxiv.org/abs/2507.08062 #qbioGN

AI for NONMEM Coding in Pharmacometrics Research and Education: Shortcut or Pitfall? https://arxiv.org/abs/2507.08144 #qbioOT

AmpLyze: A Deep Learning Model for Predicting the Hemolytic Concentration https://arxiv.org/abs/2507.08162 #qbioBM #csAI

Unavailability of experimental 3D structural data on protein folding dynamics and necessity for a new generation of structure prediction methods in this context https://arxiv.org/abs/2507.08188 #qbioBM

Formation and Regulation of Calcium Sparks on a Nonlinear Spatial Network of Ryanodine Receptors https://arxiv.org/abs/2507.08258 #physicsbioph #qbioSC

Alignment between Brains and AI: Evidence for Convergent Evolution across Modalities, Scales and Training Trajectories https://arxiv.org/abs/2507.01966 #qbioNC

Ghost in the Machine: Examining the Philosophical Implications of Recursive Algorithms in Artificial Intelligence Systems https://arxiv.org/abs/2507.01967 #qbioNC

A Data-Driven Model Predictive Controller to manage epidemics: The case of SARS-CoV-2 in Mauritius https://arxiv.org/abs/2507.01996 #qbioPE #eessSY #csSY

TubuleTracker: a high-fidelity shareware software to quantify angiogenesis architecture and maturity https://arxiv.org/abs/2507.02024 #qbioQM #qbioCB #csCV

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction https://arxiv.org/abs/2507.02025 #qbioBM

REMI: Reconstructing Episodic Memory During Intrinsic Path Planning https://arxiv.org/abs/2507.02064 #qbioNC

Coexistence and Extinction in Flow-Kick Systems: An invasion growth rate approach https://arxiv.org/abs/2507.02157 #qbioPE #mathDS