arXiv Quantitative Biology @arxiv_bio@qoto.org

What good is modeling? Introducing biology students to theory https://arxiv.org/abs/2604.13344 #physics.ed-ph #qbioPE

From Brain Models to Executable Digital Twins: Execution Semantics and Neuro-Neuromorphic Systems https://arxiv.org/abs/2604.13574 #qbioNC #cs.CE #cs.NE #cs.SE

Modeling of Self-sustained Neuron Population without External Stimulus https://arxiv.org/abs/2604.13719 #qbioNC #cs.NE

BOAT: Navigating the Sea of In Silico Predictors for Antibody Design via Multi-Objective Bayesian Optimization https://arxiv.org/abs/2604.13980 #qbioQM #statML #cs.LG

Universal principles of cell population growth follow from local contact inhibition https://arxiv.org/abs/2108.10000 #condmatstatmech #qbioPE #nlinCG

Large Language Models Align with the Human Brain during Creative Thinking https://arxiv.org/abs/2604.03480 #qbioNC #csAI #csCL

Bounding Transient Moments for a Class of Stochastic Reaction Networks Using Kolmogorov's Backward Equation https://arxiv.org/abs/2604.03794 #qbioQM #eessSY #csSY

Neurological Plausibility of AI-Generated Music for Commercial Environments: An In-Silico Cortical Investigation Using Wubble and TRIBE v2 https://arxiv.org/abs/2604.04025 #qbioNC #csSD

Topological Sensitivity in Connectome-Constrained Neural Networks https://arxiv.org/abs/2604.04033 #qbioNC #csLG

The physical basis of information flow in neural matter: a thermocoherent perspective on cognitive dynamics https://arxiv.org/abs/2604.04069 #quantph #qbioNC

Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation https://arxiv.org/abs/2604.04285 #physicschemph #physicsbioph #qbioMN #csET

Towards protein folding pathways by reconstructing protein residue networks with a policy-driven model https://arxiv.org/abs/2604.04677 #qbioBM #csLG

The limits of bio-molecular modeling with large language models : a cross-scale evaluation https://arxiv.org/abs/2604.03361 #qbioQM #cs.LG

Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognition https://arxiv.org/abs/2604.03476 #qbioBM #cs.CV #cs.AI

Thermal fluctuations set fundamental limits on ion channel function https://arxiv.org/abs/2604.03538 #condmatstatmech #physicsbioph #qbioSC

Latent-Y: A Lab-Validated Autonomous Agent for De Novo Drug Design https://arxiv.org/abs/2603.29727 #qbioBM

Copy-Spread-Annihilate Dynamics in Degree-Assortative Networks https://arxiv.org/abs/2603.29833 #condmatdisnn #physicssocph #qbioNC #nlinAO

Counterfactual Analysis of Brain Network Dynamics https://arxiv.org/abs/2603.29843 #qbioNC

PI-Mamba: Linear-Time Protein Backbone Generation via Spectrally Initialized Flow Matching https://arxiv.org/abs/2603.26705 #qbioBM #csAI #csLG

Dictionary-based Pathology Mining with Hard-instance-assisted Classifier Debiasing for Genetic Biomarker Prediction from WSIs https://arxiv.org/abs/2603.26809 #qbioQM #csCV #csLG