arXiv Quantitative Biology @arxiv_bio@qoto.org

Prediction of crucial interaction for icosahedral capsid self-assembly by configuration space atlasing using EASAL. (arXiv:2001.00316v1 [q-bio.BM]) http://arxiv.org/abs/2001.00316

On the modelling, linear stability, and numerical simulation for advection-diffusion-reaction in poroelastic media. (arXiv:2001.00370v1 [math.NA]) http://arxiv.org/abs/2001.00370

Open Source Software Sustainability Models: Initial White Paper from the Information Technology for Cancer Research Sustainability and Industry Partnership Work Group. (arXiv:1912.12371v1 [q-bio.OT]) http://arxiv.org/abs/1912.12371

A Common Gene Expression Signature Analysis Method for Multiple Types of Cancer. (arXiv:1912.12379v1 [q-bio.GN]) http://arxiv.org/abs/1912.12379

A practical guide to pseudo-marginal methods for computational inference in systems biology. (arXiv:1912.12404v1 [q-bio.MN]) http://arxiv.org/abs/1912.12404

Energy-based Graph Convolutional Networks for Scoring Protein Docking Models. (arXiv:1912.12476v1 [q-bio.BM]) http://arxiv.org/abs/1912.12476

Aligning Statistical Dynamics Captures Biological Network Functioning. (arXiv:1912.12551v1 [q-bio.QM]) http://arxiv.org/abs/1912.12551

Explainable Deep Relational Networks for Predicting Compound-Protein Affinities and Contacts. (arXiv:1912.12553v1 [q-bio.BM]) http://arxiv.org/abs/1912.12553

Highly fluorescent copper nanoclusters for sensing and bioimaging. (arXiv:1912.12587v1 [q-bio.BM]) http://arxiv.org/abs/1912.12587

When to wake up? The optimal waking-up strategies for starvation-induced persistence. (arXiv:1912.12682v1 [physics.bio-ph]) http://arxiv.org/abs/1912.12682

How old are dense core vesicles residing in en passant boutons: Simulation of the mean age of dense core vesicles in axonal arbors accounting for resident and transiting vesicle populations. (arXiv:1912.12762v1 [q-bio.SC]) http://arxiv.org/abs/1912.12762

ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction. (arXiv:1912.12796v1 [q-bio.BM]) http://arxiv.org/abs/1912.12796

Parallel optimization of fiber bundle segmentation for massive tractography datasets. (arXiv:1912.11494v1 [cs.DS]) http://arxiv.org/abs/1912.11494

A Drug Recommendation System (Dr.S) for cancer cell lines. (arXiv:1912.11548v1 [stat.ML]) http://arxiv.org/abs/1912.11548

From Quantum Chemistry to Networks in Biology: A Graph Spectral Approach to Protein Structure Analyses. (arXiv:1912.11609v1 [q-bio.MN]) http://arxiv.org/abs/1912.11609

Bacteria display optimal transport near surfaces -- bacteria as intermittent active chiral particles: trapped by hydrodynamics, escaping by adhesion. (arXiv:1912.11835v1 [physics.bio-ph]) http://arxiv.org/abs/1912.11835

Positively and negatively hydrated counterions in molecular dynamics simulations of DNA double helix. (arXiv:1912.11870v1 [q-bio.BM]) http://arxiv.org/abs/1912.11870

Homeorhesis in Waddington's Landscape by Epigenetic Feedback Regulation. (arXiv:1912.11994v1 [q-bio.MN]) http://arxiv.org/abs/1912.11994

Structural plasticity on an accelerated analog neuromorphic hardware system. (arXiv:1912.12047v1 [q-bio.NC]) http://arxiv.org/abs/1912.12047

The nitrogen operating space of world food production. (arXiv:1912.12058v1 [q-bio.PE]) http://arxiv.org/abs/1912.12058