arXiv Quantitative Biology @arxiv_bio@qoto.org

{\lambda}-Scaled-Attention: A Novel Fast Attention Mechanism for Efficient Modeling of Protein Sequences. (arXiv:2201.02912v1 [cs.LG]) http://arxiv.org/abs/2201.02912

Immersed boundary approach to biofilm spread on surfaces. (arXiv:2201.02990v1 [q-bio.CB]) http://arxiv.org/abs/2201.02990

A simple model describing evolution of genomic GC content with random perturbations in asexually reproducing organisms. (arXiv:2201.03003v1 [q-bio.QM]) http://arxiv.org/abs/2201.03003

Fixation Maximization in the Positional Moran Process. (arXiv:2201.02248v1 [cs.DS]) http://arxiv.org/abs/2201.02248

Invasion of cooperative parasites in moderately structured host populations. (arXiv:2201.02249v1 [q-bio.PE]) http://arxiv.org/abs/2201.02249

PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences. (arXiv:2201.02273v1 [q-bio.GN]) http://arxiv.org/abs/2201.02273

Control Theory Illustrates the Energy Efficiency in the Dynamic Reconfiguration of Functional Connectivity. (arXiv:2201.02340v1 [q-bio.NC]) http://arxiv.org/abs/2201.02340

A whitening approach for Transfer Entropy permits the application to narrow-band signals. (arXiv:2201.02461v1 [q-bio.NC]) http://arxiv.org/abs/2201.02461

AugmentedPCA: A Python Package of Supervised and Adversarial Linear Factor Models. (arXiv:2201.02547v1 [stat.ML]) http://arxiv.org/abs/2201.02547

Fractional calculus modeling of cell viscoelasticity quantifies drug response and maturation more robustly than integer order models. (arXiv:2201.02589v1 [physics.bio-ph]) http://arxiv.org/abs/2201.02589

Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. (arXiv:2008.08727v3 [cs.CL] UPDATED) http://arxiv.org/abs/2008.08727

Ecosystems are showing symptoms of resilience loss. (arXiv:2107.03307v2 [q-bio.PE] UPDATED) http://arxiv.org/abs/2107.03307

Robust models of SARS-CoV-2 heterogeneity and control. (arXiv:2109.11156v2 [q-bio.PE] UPDATED) http://arxiv.org/abs/2109.11156

Formal models of memory based on temporally-varying representations. (arXiv:2201.01796v1 [q-bio.NC]) http://arxiv.org/abs/2201.01796

Meta-analysis of commercial-scale trials as a means to improve decision-making processes in the poultry industry: a phytogenic feed additive case study. (arXiv:2201.01818v1 [q-bio.QM]) http://arxiv.org/abs/2201.01818

Phenotypic correlation between external and internal egg quality characteristics in 85-week-old laying hens. (arXiv:2201.01821v1 [q-bio.QM]) http://arxiv.org/abs/2201.01821

Egg shell quality and bone status as affected by environmental temperature, Ca and non-phytate P intake and in vitro limestone solubility in Single-Comb White Leghorn hens. (arXiv:2201.01830v1 [q-bio.QM]) http://arxiv.org/abs/2201.01830

Pruning deep neural networks generates a sparse, bio-inspired nonlinear controller for insect flight. (arXiv:2201.01852v1 [q-bio.QM]) http://arxiv.org/abs/2201.01852

Graph Neural Networks for Double-Strand DNA Breaks Prediction. (arXiv:2201.01855v1 [q-bio.QM]) http://arxiv.org/abs/2201.01855

Numerical Techniques for Applications of Analytical Theories to Sequence-Dependent Phase Separations of Intrinsically Disordered Proteins. (arXiv:2201.01920v1 [q-bio.BM]) http://arxiv.org/abs/2201.01920