arXiv Quantitative Biology @arxiv_bio@qoto.org

Quantifying different modeling frameworks using topological data analysis: a case study with zebrafish patterns. (arXiv:2212.12034v1 [q-bio.CB]) http://arxiv.org/abs/2212.12034

How different are self and nonself?. (arXiv:2212.12049v1 [q-bio.CB]) http://arxiv.org/abs/2212.12049

Predicting Survival of Tongue Cancer Patients by Machine Learning Models. (arXiv:2212.12114v1 [q-bio.QM]) http://arxiv.org/abs/2212.12114

Short time extremal response to step stimulus for a single cell {\sl E. coli}. (arXiv:2212.12392v1 [q-bio.CB]) http://arxiv.org/abs/2212.12392

HAC-Net: A Hybrid Attention-Based Convolutional Neural Network for Highly Accurate Protein-Ligand Binding Affinity Prediction. (arXiv:2212.12440v1 [q-bio.BM]) http://arxiv.org/abs/2212.12440

How accurately must cells measure the concentrations of signaling molecules?. (arXiv:2212.12471v1 [physics.bio-ph]) http://arxiv.org/abs/2212.12471

Mathematical Foundations for a Compositional Account of the Bayesian Brain. (arXiv:2212.12538v1 [q-bio.NC]) http://arxiv.org/abs/2212.12538

ASGARD: A Single-cell Guided pipeline to Aid Repurposing of Drugs. (arXiv:2109.06377v4 [q-bio.QM] UPDATED) http://arxiv.org/abs/2109.06377

RetroComposer: Composing Templates for Template-Based Retrosynthesis Prediction. (arXiv:2112.11225v2 [physics.chem-ph] UPDATED) http://arxiv.org/abs/2112.11225

Subharmonic solutions for a class of predator-prey models with degenerate weights in periodic environments. (arXiv:2212.11280v1 [q-bio.PE]) http://arxiv.org/abs/2212.11280

Forecasting West Nile Virus with Graph Neural Networks: Harnessing Spatial Dependence in Irregularly Sampled Geospatial Data. (arXiv:2212.11367v1 [q-bio.PE]) http://arxiv.org/abs/2212.11367

Physically Modelling Fluid- and Soft-tissue Mechanics of Lumbosacral Intraspinal Mechanosensing in Avians. (arXiv:2212.11485v1 [q-bio.TO]) http://arxiv.org/abs/2212.11485

A Palm Space Approach to Non-Linear Hawkes Processes. (arXiv:2212.11660v1 [math.PR]) http://arxiv.org/abs/2212.11660

Role of predator-prey reversal in Rock-Paper-Scissors models. (arXiv:2212.11687v1 [q-bio.PE]) http://arxiv.org/abs/2212.11687

Mind the Retrosynthesis Gap: Bridging the divide between Single-step and Multi-step Retrosynthesis Prediction. (arXiv:2212.11809v1 [physics.chem-ph]) http://arxiv.org/abs/2212.11809

SiteFerret: beyond simple pocket identification in proteins. (arXiv:2212.11888v1 [q-bio.BM]) http://arxiv.org/abs/2212.11888

CSI: Contrastive Data Stratification for Interaction Prediction and its Application to Compound-Protein Interaction Prediction. (arXiv:2111.09467v2 [cs.LG] UPDATED) http://arxiv.org/abs/2111.09467

Multiscale Graph Neural Networks for Protein Residue Contact Map Prediction. (arXiv:2212.02251v2 [q-bio.QM] UPDATED) http://arxiv.org/abs/2212.02251

Detecting Temporal shape changes with the Euler Characteristic Transform. (arXiv:2212.10883v2 [q-bio.QM] UPDATED) http://arxiv.org/abs/2212.10883

Anticancer Peptides Classification using Kernel Sparse Representation Classifier. (arXiv:2212.10567v1 [q-bio.QM]) http://arxiv.org/abs/2212.10567