arXiv Quantitative Biology @arxiv_bio@qoto.org

PPFlow: Target-aware Peptide Design with Torsional Flow Matching https://arxiv.org/abs/2405.06642 #qbioBM #csAI #csLG

The Mathematics of Chlorophyll Photoexcitation https://arxiv.org/abs/2405.06644 #qbioBM

On Recovering Higher-order Interactions from Protein Language Models https://arxiv.org/abs/2405.06645 #qbioBM #csAI #csLG

Protein atom traps as seeing by neutron scattering https://arxiv.org/abs/2405.06648 #condmatmeshall #physicsbioph #condmatsoft #qbioBM

ProLLM: Protein Chain-of-Thoughts Enhanced LLM for Protein-Protein Interaction Prediction https://arxiv.org/abs/2405.06649 #qbioBM #qbioMN #csLG

Using GANs for De Novo Protein Design Targeting Microglial IL-3R$\alpha$ to Inhibit Alzheimer's Progression https://arxiv.org/abs/2405.06651 #qbioBM #qbioNC #csLG

A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules https://arxiv.org/abs/2405.06653 #qbioBM #csLG

PROflow: An iterative refinement model for PROTAC-induced structure prediction https://arxiv.org/abs/2405.06654 #qbioBM #csAI #csLG

RNA Secondary Structure Prediction Using Transformer-Based Deep Learning Models https://arxiv.org/abs/2405.06655 #qbioBM #csAI #csLG

Molecular Docking via Weighted Subgraph Isomorphism on Quantum Annealers https://arxiv.org/abs/2405.06657 #qbioBM #csCE #csET

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity https://arxiv.org/abs/2405.05998 #qbioGN #csLG

Champuru 2: Improved scoring of alignments and a user-friendly graphical interface https://arxiv.org/abs/2405.06032 #qbioQM

Contribution of Coincidence Detection to Speech Segregation in Noisy Environments https://arxiv.org/abs/2405.06072 #qbioNC

Combined topological and spatial constraints are required to capture the structure of neural connectomes https://arxiv.org/abs/2405.06110 #physicsbioph #qbioNC

Automated Cell Structure Extraction for 3D Electron Microscopy by Deep Learning https://arxiv.org/abs/2405.06303 #qbioQM

The Evolution of Language and Human Rationality https://arxiv.org/abs/2405.06377 #qbioNC #qbioPE

Characterization of mood and emotion regulation in females with PMS/PMDD using near-infrared spectroscopy to assess prefrontal cerebral blood flow and the mood questionnaire https://arxiv.org/abs/2405.06457 #qbioOT

Advantageous and disadvantageous inequality aversion can be taught through vicarious learning of others' preferences https://arxiv.org/abs/2405.06500 #qbioNC

Towards Less Biased Data-driven Scoring with Deep Learning-Based End-to-end Database Search in Tandem Mass Spectrometry https://arxiv.org/abs/2405.06511 #qbioQM #csAI

Optimal epidemic control by social distancing and vaccination of an infection structured by time since infection: the covid-19 case study https://arxiv.org/abs/2405.06628 #qbioPE #mathAP #mathOC