arXiv Quantitative Biology @arxiv_bio@qoto.org

HGTDR: Advancing Drug Repurposing with Heterogeneous Graph Transformers https://arxiv.org/abs/2405.08031 #qbioQM #cs.LG #cs.AI

No evidence of systematic proximity ascertainment bias in early COVID-19 cases in Wuhan Reply to Weissman (2024) https://arxiv.org/abs/2405.08040 #physics.soc-ph #qbioPE

Data Valuation with Gradient Similarity https://arxiv.org/abs/2405.08217 #qbioGN #qbioQM #statML #cs.LG

Computational Thought Experiments for a More Rigorous Philosophy and Science of the Mind https://arxiv.org/abs/2405.08304 #qbioNC #cs.CL #cs.AI

Group Dispersal Modelling revisited https://arxiv.org/abs/2405.08384 #math.AP #math.PR #qbioQM

PPFlow: Target-aware Peptide Design with Torsional Flow Matching https://arxiv.org/abs/2405.06642 #qbioBM #csAI #csLG

The Mathematics of Chlorophyll Photoexcitation https://arxiv.org/abs/2405.06644 #qbioBM

On Recovering Higher-order Interactions from Protein Language Models https://arxiv.org/abs/2405.06645 #qbioBM #csAI #csLG

Protein atom traps as seeing by neutron scattering https://arxiv.org/abs/2405.06648 #condmatmeshall #physicsbioph #condmatsoft #qbioBM

ProLLM: Protein Chain-of-Thoughts Enhanced LLM for Protein-Protein Interaction Prediction https://arxiv.org/abs/2405.06649 #qbioBM #qbioMN #csLG

Using GANs for De Novo Protein Design Targeting Microglial IL-3R$\alpha$ to Inhibit Alzheimer's Progression https://arxiv.org/abs/2405.06651 #qbioBM #qbioNC #csLG

A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules https://arxiv.org/abs/2405.06653 #qbioBM #csLG

PROflow: An iterative refinement model for PROTAC-induced structure prediction https://arxiv.org/abs/2405.06654 #qbioBM #csAI #csLG

RNA Secondary Structure Prediction Using Transformer-Based Deep Learning Models https://arxiv.org/abs/2405.06655 #qbioBM #csAI #csLG

Molecular Docking via Weighted Subgraph Isomorphism on Quantum Annealers https://arxiv.org/abs/2405.06657 #qbioBM #csCE #csET

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity https://arxiv.org/abs/2405.05998 #qbioGN #csLG

Champuru 2: Improved scoring of alignments and a user-friendly graphical interface https://arxiv.org/abs/2405.06032 #qbioQM

Contribution of Coincidence Detection to Speech Segregation in Noisy Environments https://arxiv.org/abs/2405.06072 #qbioNC

Combined topological and spatial constraints are required to capture the structure of neural connectomes https://arxiv.org/abs/2405.06110 #physicsbioph #qbioNC

Automated Cell Structure Extraction for 3D Electron Microscopy by Deep Learning https://arxiv.org/abs/2405.06303 #qbioQM