arXiv Quantitative Biology @arxiv_bio@qoto.org

Phylotrack: C++ and Python libraries for in silico phylogenetic tracking https://arxiv.org/abs/2405.09389 #qbioPE #csNE

Matching domain experts by training from scratch on domain knowledge https://arxiv.org/abs/2405.09395 #qbioNC #csAI #csCL

Three Dimensional Spatial Cognition: Bees and Bats https://arxiv.org/abs/2405.09413 #qbioNC

drGAT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network https://arxiv.org/abs/2405.08979 #qbioMN #qbioQM #cs.LG

MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space https://arxiv.org/abs/2404.12141 #qbioBM #csLG

Cerebralization of mathematical quantities and physical features in neural science: a critical evaluation https://arxiv.org/abs/2405.08391 #qbioNC

Self-supervised contrastive learning unveils cortical folding pattern linked to prematurity https://arxiv.org/abs/2405.08397 #qbioNC

How forest insect outbreaks depend on forest size and tree distribution: an individual-based model results https://arxiv.org/abs/2405.08523 #qbioPE #mathPR

The Requirement for Cognition, in an Equation https://arxiv.org/abs/2405.08601 #qbioNC #qbioPE

Competition in the nutrient-driven self-cycling fermentation process https://arxiv.org/abs/2405.08735 #qbioPE #mathDS

HGTDR: Advancing Drug Repurposing with Heterogeneous Graph Transformers https://arxiv.org/abs/2405.08031 #qbioQM #cs.LG #cs.AI

No evidence of systematic proximity ascertainment bias in early COVID-19 cases in Wuhan Reply to Weissman (2024) https://arxiv.org/abs/2405.08040 #physics.soc-ph #qbioPE

Data Valuation with Gradient Similarity https://arxiv.org/abs/2405.08217 #qbioGN #qbioQM #statML #cs.LG

Computational Thought Experiments for a More Rigorous Philosophy and Science of the Mind https://arxiv.org/abs/2405.08304 #qbioNC #cs.CL #cs.AI

Group Dispersal Modelling revisited https://arxiv.org/abs/2405.08384 #math.AP #math.PR #qbioQM

PPFlow: Target-aware Peptide Design with Torsional Flow Matching https://arxiv.org/abs/2405.06642 #qbioBM #csAI #csLG

The Mathematics of Chlorophyll Photoexcitation https://arxiv.org/abs/2405.06644 #qbioBM

On Recovering Higher-order Interactions from Protein Language Models https://arxiv.org/abs/2405.06645 #qbioBM #csAI #csLG

Protein atom traps as seeing by neutron scattering https://arxiv.org/abs/2405.06648 #condmatmeshall #physicsbioph #condmatsoft #qbioBM

ProLLM: Protein Chain-of-Thoughts Enhanced LLM for Protein-Protein Interaction Prediction https://arxiv.org/abs/2405.06649 #qbioBM #qbioMN #csLG