arXiv Quantitative Biology @arxiv_bio@qoto.org

Tree balance in phylogenetic models https://arxiv.org/abs/2406.05185 #qbioPE #statAP

Processing, evaluating and understanding FMRI data with afni_proc.py https://arxiv.org/abs/2406.05248 #qbioNC

Advances in Machine Learning, Statistical Methods, and AI for Single-Cell RNA Annotation Using Raw Count Matrices in scRNA-seq Data https://arxiv.org/abs/2406.05258 #qbioOT #statOT

MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training https://arxiv.org/abs/2406.05347 #qbioBM #csAI #csLG

A Fine-tuning Dataset and Benchmark for Large Language Models for Protein Understanding https://arxiv.org/abs/2406.05540 #qbioQM #csAI #csCL #csLG

Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking https://arxiv.org/abs/2406.05738 #qbioBM #statAP #statCO #csLG

3D-MolT5: Towards Unified 3D Molecule-Text Modeling with 3D Molecular Tokenization https://arxiv.org/abs/2406.05797 #qbioBM #csAI #csCE #csCL #csLG

Improving Antibody Design with Force-Guided Sampling in Diffusion Models https://arxiv.org/abs/2406.05832 #qbioQM #qbioBM #csLG

From First-order to Higher-order Interactions: Enhanced Representation of Homotopic Functional Connectivity through Control of Intervening Variables https://arxiv.org/abs/2406.05859 #qbioNC

Hybrid metapopulation agent-based epidemiological models for efficient insight on the individual scale: a contribution to green computing https://arxiv.org/abs/2406.04386 #qbioPE

Continuous Attractor Networks for Laplace Neural Manifolds https://arxiv.org/abs/2406.04545 #qbioNC

Development and Validation of a Deep-Learning Model for Differential Treatment Benefit Prediction for Adults with Major Depressive Disorder Deployed in the Artificial Intelligence in Depression Medication Enhancement (AIDME) Study https://arxiv.org/abs/2406.04993 #qbioNC #csLG

Benchmarking Deep Jansen-Rit Parameter Inference: An in Silico Study https://arxiv.org/abs/2406.05002 #qbioNC #csAI

Accurate stochastic simulation algorithm for multiscale models of infectious diseases https://arxiv.org/abs/2406.05058 #qbioPE

Adapting Physics-Informed Neural Networks To Optimize ODEs in Mosquito Population Dynamics https://arxiv.org/abs/2406.05108 #qbioPE #csLG

SynAsk: Unleashing the Power of Large Language Models in Organic Synthesis https://arxiv.org/abs/2406.04593 #physics.chem-ph #qbioBM

Projecting Molecules into Synthesizable Chemical Spaces https://arxiv.org/abs/2406.04628 #qbioQM #cs.CE

Unsupervised representation learning with Hebbian synaptic and structural plasticity in brain-like feedforward neural networks https://arxiv.org/abs/2406.04733 #qbioNC #cs.NE

Planar chemical reaction systems with algebraic and non-algebraic limit cycles https://arxiv.org/abs/2406.05057 #math.DS #qbioMN

Diversity in Evolutionary Dynamics https://arxiv.org/abs/2406.03938 #qbioPE #csCE