arXiv Quantitative Biology @arxiv_bio@qoto.org

Bifurcations and multistability in empirical mutualistic networks https://arxiv.org/abs/2406.06897 #qbioPE #mathDS

Data mining method of single-cell omics data to evaluate a pure tissue environmental effect on gene expression level https://arxiv.org/abs/2406.06969 #qbioGN #csDM

pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection https://arxiv.org/abs/2406.06985 #qbioGN

Astrocytic NMDA Receptors Modulate the Dynamics of Continuous Attractors https://arxiv.org/abs/2406.07148 #condmatdisnn #qbioNC

Are Protein Language Models Compute Optimal? https://arxiv.org/abs/2406.07249 #qbioBM #csAI

Research on Tumors Segmentation based on Image Enhancement Method https://arxiv.org/abs/2406.05170 #qbioOT #eessIV #csCV

Tree balance in phylogenetic models https://arxiv.org/abs/2406.05185 #qbioPE #statAP

Processing, evaluating and understanding FMRI data with afni_proc.py https://arxiv.org/abs/2406.05248 #qbioNC

Advances in Machine Learning, Statistical Methods, and AI for Single-Cell RNA Annotation Using Raw Count Matrices in scRNA-seq Data https://arxiv.org/abs/2406.05258 #qbioOT #statOT

MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training https://arxiv.org/abs/2406.05347 #qbioBM #csAI #csLG

A Fine-tuning Dataset and Benchmark for Large Language Models for Protein Understanding https://arxiv.org/abs/2406.05540 #qbioQM #csAI #csCL #csLG

Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking https://arxiv.org/abs/2406.05738 #qbioBM #statAP #statCO #csLG

3D-MolT5: Towards Unified 3D Molecule-Text Modeling with 3D Molecular Tokenization https://arxiv.org/abs/2406.05797 #qbioBM #csAI #csCE #csCL #csLG

Improving Antibody Design with Force-Guided Sampling in Diffusion Models https://arxiv.org/abs/2406.05832 #qbioQM #qbioBM #csLG

From First-order to Higher-order Interactions: Enhanced Representation of Homotopic Functional Connectivity through Control of Intervening Variables https://arxiv.org/abs/2406.05859 #qbioNC

Hybrid metapopulation agent-based epidemiological models for efficient insight on the individual scale: a contribution to green computing https://arxiv.org/abs/2406.04386 #qbioPE

Continuous Attractor Networks for Laplace Neural Manifolds https://arxiv.org/abs/2406.04545 #qbioNC

Development and Validation of a Deep-Learning Model for Differential Treatment Benefit Prediction for Adults with Major Depressive Disorder Deployed in the Artificial Intelligence in Depression Medication Enhancement (AIDME) Study https://arxiv.org/abs/2406.04993 #qbioNC #csLG

Benchmarking Deep Jansen-Rit Parameter Inference: An in Silico Study https://arxiv.org/abs/2406.05002 #qbioNC #csAI

Accurate stochastic simulation algorithm for multiscale models of infectious diseases https://arxiv.org/abs/2406.05058 #qbioPE