arXiv Quantitative Biology @arxiv_bio@qoto.org

NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics https://arxiv.org/abs/2406.11906 #qbioQM #csAI

Uncovering sequence diversity from a known protein structure https://arxiv.org/abs/2406.11975 #qbioQM

Modeling, Inference, and Prediction in Mobility-Based Compartmental Models for Epidemiology https://arxiv.org/abs/2406.12002 #physicssocph #qbioPE #mathNA #csLG #csNA

skandiver: a divergence-based analysis tool for identifying intercellular mobile genetic elements https://arxiv.org/abs/2406.12064 #qbioGN

Computing in the Life Sciences: From Early Algorithms to Modern AI https://arxiv.org/abs/2406.12108 #qbioOT #csAI

Vegetation clustering and self-organization in inhomogeneous environments https://arxiv.org/abs/2406.12581 #qbioPE #nlinAO #nlinPS

Reproducibility of predictive networks for mouse visual cortex https://arxiv.org/abs/2406.12625 #qbioNC

Learning Molecular Representation in a Cell https://arxiv.org/abs/2406.12056 #qbioQM #cs.LG

STNAGNN: Spatiotemporal Node Attention Graph Neural Network for Task-based fMRI Analysis https://arxiv.org/abs/2406.12065 #qbioNC #cs.LG

12 Labours tools for developing Functional Tissue Units https://arxiv.org/abs/2406.10301 #qbioTO #mathDS #csMS

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models https://arxiv.org/abs/2406.10391 #qbioQM #csLG

Mining comorbidities: a brief survey https://arxiv.org/abs/2406.10696 #qbioOT

A stochastic field theory for the evolution of quantitative traits in finite populations https://arxiv.org/abs/2406.10739 #condmatstatmech #physicsbioph #qbioPE #mathPR

Improved absolute abundance estimates from spatial count data with simulation and microfossil case studies https://arxiv.org/abs/2406.10921 #qbioQM

Catalytic evolution of cooperation in a population with behavioural bimodality https://arxiv.org/abs/2406.11121 #condmatdisnn #qbioPE #nlinAO

Computing the Frequency Response of Biochemical Networks: A Python module https://arxiv.org/abs/2406.11140 #qbioMN #qbioQM

Increasing certainty in systems biology models using Bayesian multimodel inference https://arxiv.org/abs/2406.11178 #qbioQM

Extinction in agent-based and collective models of bet-hedging https://arxiv.org/abs/2406.11482 #condmatstatmech #qbioPE

BrainFounder: Towards Brain Foundation Models for Neuroimage Analysis https://arxiv.org/abs/2406.10395 #eess.IV #qbioNC #cs.CV

Nursery function rehabilitation projects in port areas can support fish populations but they remain less effective than ensuring compliance to fisheries management https://arxiv.org/abs/2406.09470 #qbioPE