arXiv Quantitative Biology @arxiv_bio@qoto.org

Vertex-Edge Weighted Molecular Graphs: A study on topological indices and their relevance to physicochemical properties of drugs in use cancer treatment https://arxiv.org/abs/2408.06367 #qbioBM

Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data https://arxiv.org/abs/2408.06377 #qbioGN #csAI #csLG

Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion https://arxiv.org/abs/2408.06391 #qbioQM #csAI #csLG

Design Proteins Using Large Language Models: Enhancements and Comparative Analyses https://arxiv.org/abs/2408.06396 #qbioQM #csAI #csLG

PhaGO: Protein function annotation for bacteriophages by integrating the genomic context https://arxiv.org/abs/2408.06402 #qbioQM #csAI #csLG

All the single cells: single-cell transcriptomics/epigenomics experimental design and analysis considerations for glial biologists https://arxiv.org/abs/2408.06521 #qbioQM

Insights, opportunities and challenges provided by large cell atlases https://arxiv.org/abs/2408.06563 #qbioGN

A CRH Theory of Autism Spectrum Disorder https://arxiv.org/abs/2408.06750 #qbioNC

A Dynorphin Theory of Depression and Bipolar Disorder https://arxiv.org/abs/2408.06763 #qbioNC

A Sympathetic Nervous System Theory of Migraine https://arxiv.org/abs/2408.06780 #qbioNC

Optimal Strategy for Stabilizing Protein Folding Intermediates https://arxiv.org/abs/2408.05224 #qbioBM #mathOC

scASDC: Attention Enhanced Structural Deep Clustering for Single-cell RNA-seq Data https://arxiv.org/abs/2408.05258 #qbioGN #csAI #csLG

Within-host infection dynamics with master equations and the method of moments: A case study of human papillomavirus in the epithelium https://arxiv.org/abs/2408.05298 #qbioPE

Counterions in RNA structure: Structural bioinformatics analysis to identify the role of Mg2+ ions in base pair formation https://arxiv.org/abs/2408.05355 #qbioBM

Testing the Brain Wave Hypothesis https://arxiv.org/abs/2408.05368 #qbioNC

The evolution of systems biology and systems medicine: From mechanistic models to uncertainty quantification https://arxiv.org/abs/2408.05395 #qbioMN #qbioQM

TGL-Lambda: An implementation of TrapGrid to estimate trap attractiveness from heterogeneous field data https://arxiv.org/abs/2408.05408 #qbioPE #qbioQM

Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots https://arxiv.org/abs/2408.05420 #qbioQM

Recurrence Resonance -- Noise-Enhanced Dynamics in Recurrent Neural Networks https://arxiv.org/abs/2408.05579 #qbioNC

Geometrical determinant of nonlinear synaptic integration in human cortical pyramidal neurons https://arxiv.org/abs/2408.05633 #qbioNC