arXiv Quantitative Biology @arxiv_bio@qoto.org

Reaction-conditioned De Novo Enzyme Design with GENzyme https://arxiv.org/abs/2411.16694 #qbioBM #csAI

Comparing biological models and theories of life with process-enablement graphs https://arxiv.org/abs/2411.17012 #qbioQM

Continual Evolution in Nonreciprocal Ecological Models https://arxiv.org/abs/2411.17148 #condmatstatmech #condmatdisnn #qbioPE

Emergenet: A Digital Twin of Sequence Evolution for Scalable Emergence Risk Assessment of Animal Influenza A Strains https://arxiv.org/abs/2411.17154 #qbioPE #statML #csLG

Energy Consumption Optimization, Response Time Differences and Indicators in Cortical Working Memory Revealed by Nonequilibrium https://arxiv.org/abs/2411.17206 #qbioNC

Critically assessing atavism, an evolution-centered and deterministic hypothesis on cancer https://arxiv.org/abs/2411.17242 #qbioPE

Storing overlapping associative memories on latent manifolds in low-rank spiking networks https://arxiv.org/abs/2411.17485 #qbioNC #csLG #csNE

Quantifying information stored in synaptic connections rather than in firing patterns of neural networks https://arxiv.org/abs/2411.17692 #physicsbioph #qbioNC #mathIT #csIT

From Exponential to Polynomial Complexity: Efficient Permutation Counting with Subword Constraints https://arxiv.org/abs/2411.16744 #qbioGN #cs.CR

Skin Sympathetic Nerve Activity Driver Extraction through Non-Negative Sparse Decomposition https://arxiv.org/abs/2411.15163 #qbioNC

Novel Cisplatin-Magnetoliposome Complex Shows Enhanced Antitumor Activity via Hyperthermia https://arxiv.org/abs/2411.15167 #condmatsoft #qbioTO

Adaptive Intelligence: leveraging insights from adaptive behavior in animals to build flexible AI systems https://arxiv.org/abs/2411.15234 #qbioNC #csAI

Bio-inspired AI: Integrating Biological Complexity into Artificial Intelligence https://arxiv.org/abs/2411.15243 #qbioNC #csAI #csCL #csCV #csNE #csSC

The Mean-Field Survival Model for Stripe Formation in Zebrafish Exhibits Turing Instability https://arxiv.org/abs/2411.15293 #qbioTO #mathDS #qbioPE

An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing https://arxiv.org/abs/2411.15309 #qbioGN

Group-wise normalization in differential abundance analysis of microbiome samples https://arxiv.org/abs/2411.15400 #qbioGN

SPRINT Enables Interpretable and Ultra-Fast Virtual Screening against Thousands of Proteomes https://arxiv.org/abs/2411.15418 #qbioBM #csLG

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion https://arxiv.org/abs/2411.15467 #qbioGN

Accelerated Hydration Site Localization and Thermodynamic Profiling https://arxiv.org/abs/2411.15618 #qbioBM #csLG

JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data https://arxiv.org/abs/2411.14464 #qbioQM #qbioBM #csAI #csLG