arXiv Computer Science @arxiv_cs@qoto.org

Localizing anatomical landmarks are important tasks in medical image analysis. However, the landmarks to be localized often lack prominent visual features. Their locations are elusive and easily confused with the background, and thus precise localization highly depends on the context formed by their surrounding areas. In addition, the required precision is usually higher than segmentation and object detection tasks. Therefore, localization has its unique challenges different from segmentation or detection. In this paper, we propose a zoom-in attentive network (ZIAN) for anatomical landmark localization in ocular images. First, a coarse-to-fine, or "zoom-in" strategy is utilized to learn the contextualized features in different scales. Then, an attentive fusion module is adopted to aggregate multi-scale features, which consists of 1) a co-attention network with a multiple regions-of-interest (ROIs) scheme that learns complementary features from the multiple ROIs, 2) an attention-based fusion module which integrates the multi-ROIs features and non-ROI features. We evaluated ZIAN on two open challenge tasks, i.e., the fovea localization in fundus images and scleral spur localization in AS-OCT images. Experiments show that ZIAN achieves promising performances and outperforms state-of-the-art localization methods. The source code and trained models of ZIAN are available at https://github.com/leixiaofeng-astar/OMIA9-ZIAN.

Machine learning based traffic forecasting models leverage sophisticated spatiotemporal auto-correlations to provide accurate predictions of city-wide traffic states. However, existing methods assume a reliable and unbiased forecasting environment, which is not always available in the wild. In this work, we investigate the vulnerability of spatiotemporal traffic forecasting models and propose a practical adversarial spatiotemporal attack framework. Specifically, instead of simultaneously attacking all geo-distributed data sources, an iterative gradient-guided node saliency method is proposed to identify the time-dependent set of victim nodes. Furthermore, we devise a spatiotemporal gradient descent based scheme to generate real-valued adversarial traffic states under a perturbation constraint. Meanwhile, we theoretically demonstrate the worst performance bound of adversarial traffic forecasting attacks. Extensive experiments on two real-world datasets show that the proposed two-step framework achieves up to $67.8\%$ performance degradation on various advanced spatiotemporal forecasting models. Remarkably, we also show that adversarial training with our proposed attacks can significantly improve the robustness of spatiotemporal traffic forecasting models. Our code is available in \url{https://github.com/luckyfan-cs/ASTFA}.

Electrical energy is essential in today's society. Accurate electrical load forecasting is beneficial for better scheduling of electricity generation and saving electrical energy. In this paper, we propose theory-guided deep-learning load forecasting 2.0 (TgDLF2.0) to solve this issue, which is an improved version of the theory-guided deep-learning framework for load forecasting via ensemble long short-term memory (TgDLF). TgDLF2.0 introduces the deep-learning model Transformer and transfer learning on the basis of dividing the electrical load into dimensionless trends and local fluctuations, which realizes the utilization of domain knowledge, captures the long-term dependency of the load series, and is more appropriate for realistic scenarios with scarce samples. Cross-validation experiments on different districts show that TgDLF2.0 is approximately 16% more accurate than TgDLF and saves more than half of the training time. TgDLF2.0 with 50% weather noise has the same accuracy as TgDLF without noise, which proves its robustness. We also preliminarily mine the interpretability of Transformer in TgDLF2.0, which may provide future potential for better theory guidance. Furthermore, experiments demonstrate that transfer learning can accelerate convergence of the model in half the number of training epochs and achieve better performance.

Developing efficient time series anomaly detection techniques is important to maintain service quality and provide early alarms. Generative neural network methods are one class of the unsupervised approaches that are achieving increasing attention in recent years. In this paper, we have proposed an unsupervised Generative Adversarial Network (GAN)-based anomaly detection framework, DEGAN. It relies solely on normal time series data as input to train a well-configured discriminator (D) into a standalone anomaly predictor. In this framework, time series data is processed by the sliding window method. Expected normal patterns in data are leveraged to develop a generator (G) capable of generating normal data patterns. Normal data is also utilized in hyperparameter tuning and D model selection steps. Validated D models are then extracted and applied to evaluate unseen (testing) time series and identify patterns that have anomalous characteristics. Kernel density estimation (KDE) is applied to data points that are likely to be anomalous to generate probability density functions on the testing time series. The segments with the highest relative probabilities are detected as anomalies. To evaluate the performance, we tested on univariate acceleration time series for five miles of a Class I railroad track. We implemented the framework to detect the real anomalous observations identified by operators. The results show that leveraging the framework with a CNN D architecture results in average best recall and precision of 80% and 86%, respectively, which demonstrates that a well-trained standalone D model has the potential to be a reliable anomaly detector. Moreover, the influence of GAN hyperparameters, GAN architectures, sliding window sizes, clustering of time series, and model validation with labeled/unlabeled data were also investigated.

Aggregating a dataset, then injecting some noise, is a simple and common way to release differentially private data.However, aggregated data -- even without noise -- is not an appropriate input for machine learning classifiers.In this work, we show how a new model, similar to a logistic regression, may be learned from aggregated data only by approximating the unobserved feature distribution with a maximum entropy hypothesis. The resulting model is a Markov Random Field (MRF), and we detail how to apply, modify and scale a MRF training algorithm to our setting. Finally we present empirical evidence on several public datasets that the model learned this way can achieve performances comparable to those of a logistic model trained with the full unaggregated data.

Few shot classification aims to learn to recognize novel categories using only limited samples per category. Most current few shot methods use a base dataset rich in labeled examples to train an encoder that is used for obtaining representations of support instances for novel classes. Since the test instances are from a distribution different to the base distribution, their feature representations are of poor quality, degrading performance. In this paper we propose to make use of the well-trained feature representations of the base dataset that are closest to each support instance to improve its representation during meta-test time. To this end, we propose BaseTransformers, that attends to the most relevant regions of the base dataset feature space and improves support instance representations. Experiments on three benchmark data sets show that our method works well for several backbones and achieves state-of-the-art results in the inductive one shot setting. Code is available at github.com/mayug/BaseTransformers

We prove two lower bounds for the complexity of non-log-concave sampling within the framework of Balasubramanian et al. (2022), who introduced the use of Fisher information (FI) bounds as a notion of approximate first-order stationarity in sampling. Our first lower bound shows that averaged LMC is optimal for the regime of large FI by reducing the problem of finding stationary points in non-convex optimization to sampling. Our second lower bound shows that in the regime of small FI, obtaining a FI of at most $\varepsilon^2$ from the target distribution requires $\text{poly}(1/\varepsilon)$ queries, which is surprising as it rules out the existence of high-accuracy algorithms (e.g., algorithms using Metropolis-Hastings filters) in this context.

Abbreviations are unavoidable yet critical parts of the medical text. Using abbreviations, especially in clinical patient notes, can save time and space, protect sensitive information, and help avoid repetitions. However, most abbreviations might have multiple senses, and the lack of a standardized mapping system makes disambiguating abbreviations a difficult and time-consuming task. The main objective of this study is to examine the feasibility of token classification methods for medical abbreviation disambiguation. Specifically, we explore the capability of token classification methods to deal with multiple unique abbreviations in a single text. We use two public datasets to compare and contrast the performance of several transformer models pre-trained on different scientific and medical corpora. Our proposed token classification approach outperforms the more commonly used text classification models for the abbreviation disambiguation task. In particular, the SciBERT model shows a strong performance for both token and text classification tasks over the two considered datasets. Furthermore, we find that abbreviation disambiguation performance for the text classification models becomes comparable to that of token classification only when postprocessing is applied to their predictions, which involves filtering possible labels for an abbreviation based on the training data.

Post-acute sequelae of SARS-CoV-2 infection (PASC) or Long COVID is an emerging medical condition that has been observed in several patients with a positive diagnosis for COVID-19. Historical Electronic Health Records (EHR) like diagnosis codes, lab results and clinical notes have been analyzed using deep learning and have been used to predict future clinical events. In this paper, we propose an interpretable deep learning approach to analyze historical diagnosis code data from the National COVID Cohort Collective (N3C) to find the risk factors contributing to developing Long COVID. Using our deep learning approach, we are able to predict if a patient is suffering from Long COVID from a temporally ordered list of diagnosis codes up to 45 days post the first COVID positive test or diagnosis for each patient, with an accuracy of 70.48\%. We are then able to examine the trained model using Gradient-weighted Class Activation Mapping (GradCAM) to give each input diagnoses a score. The highest scored diagnosis were deemed to be the most important for making the correct prediction for a patient. We also propose a way to summarize these top diagnoses for each patient in our cohort and look at their temporal trends to determine which codes contribute towards a positive Long COVID diagnosis.

A key contributor to recent progress in 3D detection from single images is monocular depth estimation. Existing methods focus on how to leverage depth explicitly, by generating pseudo-pointclouds or providing attention cues for image features. More recent works leverage depth prediction as a pretraining task and fine-tune the depth representation while training it for 3D detection. However, the adaptation is insufficient and is limited in scale by manual labels. In this work, we propose to further align depth representation with the target domain in unsupervised fashions. Our methods leverage commonly available LiDAR or RGB videos during training time to fine-tune the depth representation, which leads to improved 3D detectors. Especially when using RGB videos, we show that our two-stage training by first generating pseudo-depth labels is critical because of the inconsistency in loss distribution between the two tasks. With either type of reference data, our multi-task learning approach improves over the state of the art on both KITTI and NuScenes, while matching the test-time complexity of its single task sub-network.

To deploy deep learning algorithms on resource-limited scenarios, an emerging device-resistive random access memory (ReRAM) has been regarded as promising via analog computing. However, the practicability of ReRAM is primarily limited due to the weight drifting of ReRAM neural networks due to multi-factor reasons, including manufacturing, thermal noises, and etc. In this paper, we propose a novel Bayesian optimization method for fault tolerant neural network architecture (BayesFT). For neural architecture search space design, instead of conducting neural architecture search on the whole feasible neural architecture search space, we first systematically explore the weight drifting tolerance of different neural network components, such as dropout, normalization, number of layers, and activation functions in which dropout is found to be able to improve the neural network robustness to weight drifting. Based on our analysis, we propose an efficient search space by only searching for dropout rates for each layer. Then, we use Bayesian optimization to search for the optimal neural architecture robust to weight drifting. Empirical experiments demonstrate that our algorithmic framework has outperformed the state-of-the-art methods by up to 10 times on various tasks, such as image classification and object detection.

Developing deep generative models has been an emerging field due to the ability to model and generate complex data for various purposes, such as image synthesis and molecular design. However, the advancement of deep generative models is limited by challenges to generate objects that possess multiple desired properties: 1) the existence of complex correlation among real-world properties is common but hard to identify; 2) controlling individual property enforces an implicit partially control of its correlated properties, which is difficult to model; 3) controlling multiple properties under various manners simultaneously is hard and under-explored. We address these challenges by proposing a novel deep generative framework that recovers semantics and the correlation of properties through disentangled latent vectors. The correlation is handled via an explainable mask pooling layer, and properties are precisely retained by generated objects via the mutual dependence between latent vectors and properties. Our generative model preserves properties of interest while handling correlation and conflicts of properties under a multi-objective optimization framework. The experiments demonstrate our model's superior performance in generating data with desired properties.

It is ten years since neural networks made their spectacular comeback. Prompted by this anniversary, we take a holistic perspective on Artificial Intelligence (AI). Supervised Learning for cognitive tasks is effectively solved - provided we have enough high-quality labeled data. However, deep neural network models are not easily interpretable, and thus the debate between blackbox and whitebox modeling has come to the fore. The rise of attention networks, self-supervised learning, generative modeling, and graph neural networks has widened the application space of AI. Deep Learning has also propelled the return of reinforcement learning as a core building block of autonomous decision making systems. The possible harms made possible by new AI technologies have raised socio-technical issues such as transparency, fairness, and accountability. The dominance of AI by Big-Tech who control talent, computing resources, and most importantly, data may lead to an extreme AI divide. Failure to meet high expectations in high profile, and much heralded flagship projects like self-driving vehicles could trigger another AI winter.

Most causal discovery procedures assume that there are no latent confounders in the system, which is often violated in real-world problems. In this paper, we consider a challenging scenario for causal structure identification, where some variables are latent and they form a hierarchical graph structure to generate the measured variables; the children of latent variables may still be latent and only leaf nodes are measured, and moreover, there can be multiple paths between every pair of variables (i.e., it is beyond tree structure). We propose an estimation procedure that can efficiently locate latent variables, determine their cardinalities, and identify the latent hierarchical structure, by leveraging rank deficiency constraints over the measured variables. We show that the proposed algorithm can find the correct Markov equivalence class of the whole graph asymptotically under proper restrictions on the graph structure.

Accurate long series forecasting of traffic information is critical for the development of intelligent traffic systems. We may benefit from the rapid growth of neural network analysis technology to better understand the underlying functioning patterns of traffic networks as a result of this progress. Due to the fact that traffic data and facility utilization circumstances are sequentially dependent on past and present situations, several related neural network techniques based on temporal dependency extraction models have been developed to solve the problem. The complicated topological road structure, on the other hand, amplifies the effect of spatial interdependence, which cannot be captured by pure temporal extraction approaches. Additionally, the typical Deep Recurrent Neural Network (RNN) topology has a constraint on global information extraction, which is required for comprehensive long-term prediction. This study proposes a new spatial-temporal neural network architecture, called Spatial-Temporal Graph-Informer (STGIN), to handle the long-term traffic parameters forecasting issue by merging the Informer and Graph Attention Network (GAT) layers for spatial and temporal relationships extraction. The attention mechanism potentially guarantees long-term prediction performance without significant information loss from distant inputs. On two real-world traffic datasets with varying horizons, experimental findings validate the long sequence prediction abilities, and further interpretation is provided.

Guided exploration with expert demonstrations improves data efficiency for reinforcement learning, but current algorithms often overuse expert information. We propose a novel algorithm to speed up Q-learning with the help of a limited amount of imperfect expert demonstrations. The algorithm avoids excessive reliance on expert data by relaxing the optimal expert assumption and gradually reducing the usage of uninformative expert data. Experimentally, we evaluate our approach on a sparse-reward chain environment and six more complicated Atari games with delayed rewards. With the proposed methods, we can achieve better results than Deep Q-learning from Demonstrations (Hester et al., 2017) in most environments.

We address the problem of safe reinforcement learning from pixel observations. Inherent challenges in such settings are (1) a trade-off between reward optimization and adhering to safety constraints, (2) partial observability, and (3) high-dimensional observations. We formalize the problem in a constrained, partially observable Markov decision process framework, where an agent obtains distinct reward and safety signals. To address the curse of dimensionality, we employ a novel safety critic using the stochastic latent actor-critic (SLAC) approach. The latent variable model predicts rewards and safety violations, and we use the safety critic to train safe policies. Using well-known benchmark environments, we demonstrate competitive performance over existing approaches with respects to computational requirements, final reward return, and satisfying the safety constraints.

The idea of embedding optimization problems into deep neural networks as optimization layers to encode constraints and inductive priors has taken hold in recent years. Most existing methods focus on implicitly differentiating Karush-Kuhn-Tucker (KKT) conditions in a way that requires expensive computations on the Jacobian matrix, which can be slow and memory-intensive. In this paper, we developed a new framework, named Alternating Differentiation (Alt-Diff), that differentiates optimization problems (here, specifically in the form of convex optimization problems with polyhedral constraints) in a fast and recursive way. Alt-Diff decouples the differentiation procedure into a primal update and a dual update in an alternating way. Accordingly, Alt-Diff substantially decreases the dimensions of the Jacobian matrix and thus significantly increases the computational speed of implicit differentiation. Further, we present the computational complexity of the forward and backward pass of Alt-Diff and show that Alt-Diff enjoys quadratic computational complexity in the backward pass. Another notable difference between Alt-Diff and state-of-the-arts is that Alt-Diff can be truncated for the optimization layer. We theoretically show that: 1) Alt-Diff can converge to consistent gradients obtained by differentiating KKT conditions; 2) the error between the gradient obtained by the truncated Alt-Diff and by differentiating KKT conditions is upper bounded by the same order of variables' truncation error. Therefore, Alt-Diff can be truncated to further increases computational speed without sacrificing much accuracy. A series of comprehensive experiments demonstrate that Alt-Diff yields results comparable to the state-of-the-arts in far less time.

Nowadays, user privacy is becoming an issue that cannot be bypassed for system developers, especially for that of web applications where data can be easily transferred through internet. Thankfully, federated learning proposes an innovative method to train models with distributed devices while data are kept in local storage. However, unlike general neural networks, although graph-based networks have achieved great success in classification tasks and advanced recommendation system, its high performance relies on the rich context provided by a graph structure, which is vulnerable when data attributes are incomplete. Therefore, the latter becomes a realistic problem when implementing federated learning for graph-based networks. Knowing that data embedding is a representation in a different space, we propose our Federated Graph-based Networks with Shared Embedding (Feras), which uses shared embedding data to train the network and avoids the direct sharing of original data. A solid theoretical proof of the convergence of Feras is given in this work. Experiments on different datasets (PPI, Flickr, Reddit) are conducted to show the efficiency of Feras for centralized learning. Finally, Feras enables the training of current graph-based models in the federated learning framework for privacy concern.

Reinforcement Learning (RL) is a general framework concerned with an agent that seeks to maximize rewards in an environment. The learning typically happens through trial and error using explorative methods, such as epsilon-greedy. There are two approaches, model-based and model-free reinforcement learning, that show concrete results in several disciplines. Model-based RL learns a model of the environment for learning the policy while model-free approaches are fully explorative and exploitative without considering the underlying environment dynamics. Model-free RL works conceptually well in simulated environments, and empirical evidence suggests that trial and error lead to a near-optimal behavior with enough training. On the other hand, model-based RL aims to be sample efficient, and studies show that it requires far less training in the real environment for learning a good policy. A significant challenge with RL is that it relies on a well-defined reward function to work well for complex environments and such a reward function is challenging to define. Goal-Directed RL is an alternative method that learns an intrinsic reward function with emphasis on a few explored trajectories that reveals the path to the goal state. This paper introduces a novel reinforcement learning algorithm for predicting the distance between two states in a Markov Decision Process. The learned distance function works as an intrinsic reward that fuels the agent's learning. Using the distance-metric as a reward, we show that the algorithm performs comparably to model-free RL while having significantly better sample-efficiently in several test environments.