Digital staining in optical microscopy using deep learning -- a reviewUntil recently, conventional biochemical staining had the undisputed status
as well-established benchmark for most biomedical problems related to clinical
diagnostics, fundamental research and biotechnology. Despite this role as
gold-standard, staining protocols face several challenges, such as a need for
extensive, manual processing of samples, substantial time delays, altered
tissue homeostasis, limited choice of contrast agents for a given sample, 2D
imaging instead of 3D tomography and many more. Label-free optical
technologies, on the other hand, do not rely on exogenous and artificial
markers, by exploiting intrinsic optical contrast mechanisms, where the
specificity is typically less obvious to the human observer. Over the past few
years, digital staining has emerged as a promising concept to use modern deep
learning for the translation from optical contrast to established biochemical
contrast of actual stainings. In this review article, we provide an in-depth
analysis of the current state-of-the-art in this field, suggest methods of good
practice, identify pitfalls and challenges and postulate promising advances
towards potential future implementations and applications.
arxiv.org