Edwin Hernandez-Garzon @elfulbito@qoto.org

RT @llinas_marta
¡Enhorabuena a mi ejemplo a seguir!! Premio Talento Andaluz! Ha sonado el astrocito en este auditorio del ayuntamiento de Madrid! Orgullosa de ti!! Qué arte!! @InstitutoCajal @SENC_

RT @RogerDAntuono
Join us in the wonderful Porto (Portugal) for
"Defragmentation TS2", 8-12 May 2023

in-person #training school on #cloud #bioimageanalysis

EXTENDED deadline: 15 March 2023!

https://eubias.org/NEUBIAS/training-schools/neubias-academy-home/defragmentation-training-school-2023/

@NEUBIAS_COST
@EoscLife
@TheCrick
@EuroBioImaging
@AI4LifeTeam
@ALM_i3S https://twitter.com/RogerDAntuono/status/1628132627659034664

RT @SPAOM5
Join us in Faro PT @UAlg for #SPAOM2023

You can find more info here
http://www.spaom2023.pt

#microscopy @ABC_RInstitute @CienciasDoMar #ccmaralgarve #ualg #Bioimaging

RT @loicaroyer
We present #Zebrahub: a timecourse atlas of zebrafish embryonic development, combining #scRNAseq time-course data with #lightsheet live imaging. Explore our seq. and imaging datasets interactively at

http://www.biorxiv.org/content/10.1101/2023.03.06.531398v1.article-info

http://zebrahub.org
1/n

RT @BradKrajina
I'm creating 3D tours of open single cell RNA-seq data in UMAP space. Here, using data from 50k brain cells by the @AllenInstitute . (https://portal.brain-map.org/atlases-and-data/rnaseq/human-multiple-cortical-areas-smart-seq). The UMAP position and class of every cell is read into Blender, realized as a stylized, class-specific model I sculpted

RT @maralampert
I wrote a @focalplane_jcs blog post about "Rescaling images and voxel (an)isotropy" adressing the importance of rescaling 3D image data on an example dataset provided by @biyolokum (CC-BY).
I hope it's useful
Feedback ly welcome!
https://focalplane.biologists.com/2023/03/02/rescaling-images-and-pixel-anisotropy/

RT @ilastik_team
Dear users old and new, the team is proud to present the long-awaited stable release 1.4.0 Download at https://ilastik.org to discover the Neutral Network workflow (inference), much improved Multicut workflow, bug fixes and a new start screen! https://youtu.be/PfXCKNhsOLw

RT @RogerDAntuono
The deadline to apply for the #cloud #bioimageanalysis #training school

"Defragmentation TS2"
8-12 May 2023, Porto (Portugal)

is 8 March 2023!

More info here:
https://eubias.org/NEUBIAS/training-schools/neubias-academy-home/defragmentation-training-school-2023/

@NEUBIAS_COST @EoscLife @EuroBioImaging @AI4LifeTeam @ALM_i3S https://twitter.com/RogerDAntuono/status/1628132627659034664

RT @notjustmoore
Latest report from the #OMENGFF #Community describing #OMEZARR, a #CloudOptimized #BioImaging #DataFormat, is out now on #bioRxiv!

If you have issues with big, slow, or otherwise unwieldy imaging data, reach out or take a look for a #FAIR-er option.

https://www.biorxiv.org/content/10.1101/2023.02.17.528834v1

RT @erturklab
Imagine you could stain whole adult mice with standard IgG antibodies. What you couldn't do! We present wildDISCO technology for this, creating the first whole body vascular, lymphatic, and nerve atlases. By @HongchengM @jieluo692 https://www.biorxiv.org/content/10.1101/2023.02.17.528921v1.full.pdf (turn on the sound)

RT @AlainChedotal
Wild Disco! @erturklab. Removing cholesterol with Cyclodextrin improves antibody penetration for 3D immunolabelling of whole mouse body. Combined with 3DISCO clearing. Nice collection of movies describing lymphatics & nerves generated with @syGlassVR
https://biorxiv.org/cgi/content/short/2023.02.17.528921v1

RT @AI4LifeTeam
We're thrilled to launch the first #AI4Life #OpenCall today! We offer #DeepLearning support to life #scientists who have unmet image analysis needs.

Apply now!
https://ai4life.eurobioimaging.eu/first-open-call/

Deadline: March 31, 2023

@REA_research #AI #Bioimaging #Imaging #ImageAnalysis

RT @biovoxxel
Amazing initiative meant to facilitate and improve scientific image publishing quality.
Have a look at https://arxiv.org/abs/2302.07005

#bioimaging #Publication #Images #ScienceCommunication

RT @VirginieUhlmann
Want to work at the intersection of morphometry and representation learning for bioimage analysis?

We have TWO open postdoctoral positions! Each comes with its own challenging biological question, unique dataset, and exceptional team of collaborators!

Details below

RT @MartinFernholz
I am super excited to show you DeepD3, an open framework for automated quantification of dendritic spines. Finally an open-source tool to quickly and reliably identify and segment dendritic spines in a wide range of image data! Tweeprint below. (1/21)

RT @IgnacioArganda
1/3 We're hiring! Seeking a 2-year Postdoctoral Fellow to join our research team for the Graal project ("Developing an Adaptive Machine Learning Platform for Computational Chemistry") funded by the #IKUR program. http://dipc.ehu.es/join_us/IKUR_POSTDOCS_CALL_2023.pdf Ref. 2023/28 – PostDoc 8. HPC&IA

RT @chiarellast
Happy to present @PhotonicsWest: "FLUTE: a Python GUI for interactive phasor analysis of FLIM data".
Open source code developed by #DaleGottlieb with @baharasadipour and #LienUng @LabOptBio.
Free user-friendly GUI for large FLIM dataset.
https://github.com/LaboratoryOpticsBiosciences/FLUTE

RT @erturklab
An unbiased study of whole biological systems is key to deciphering complexity. Our new paper describes the steps & applications of vDISCO whole mouse imaging in @NatureProtocols work by @MarikaRuiyao, @ilginkolabas et al. #vDISCO #clearing
https://www.nature.com/articles/s41596-022-00788-2 1/n