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RT @EdvardMoser
Thanks to @ChanZuckerberg for enabling distribution of our @TheMini2P 🔬 for large-scale neural activity imaging. We are honored that @cziscience has identified it as a next-generation technology for combatting all diseases. @WikiZong @KISNeuro
chanzuckerberg.com/science/pro

RT @jmutterer
Take a break from Python and try the new ImageJ Turtle Graphics macro library. Adapted from the Apple II logo version, straight from the 80s 🤣!

RT @haesleinhuepf
Exciting news! 📢 @NEUBIAS_COST receives funding from @cziscience for founding a sustainable Society for Knowledge Exchange in 🎉
Big thanks to CZI, everyone involved in ✍️ and our new hosting organization @GerBI_GMB 😃
🔬🖥️🥳
Read more: gerbi-gmb.de/2023/01/24/neubia twitter.com/cziscience/status/

RT @redglial
Hoy es un día muy triste para nuestra red, hoy perdemos a nuestra compañera Elena Galea. Nos qureemos despedir con las palabras de @AmandaSSaavedra. “Lo primero que llamaba la atención de Elena era majestuosa melena blanca.

RT @CiminiLab
I'm beyond delighted to announce that @NEUBIAS_COST has been awarded a grant from @cziscience to create SoBIAS, the Society of BioImage Analysts. More details to come, but see the announcement and all the other fantastic grantees here! chanzuckerberg.com/science/pro

RT @turkubioimaging
We are very happy to announce our Image analysis course is opening to register! Apply here: link.webropolsurveys.com/S/2E2

RT @Springer_Shop
textbook: Data Analysis Workflows ‒ Advanced Components and Methods (2022) bit.ly/3XYTpHJ Edited by Kota Miura @cmci_ and Nataša Sladojene.

RT @jwoodgett
Some thoughts on core facilities.
1. These are enormous all-boat lifters if supported well.
2. They should be run by experts who are commensurately valued and supported. This is a career path. Include names on papers if they’ve contributed insight, even if fee-for-service. /1

RT @haesleinhuepf
Did you know? After setting up an image processing workflow using the napari-assistant, you can export a @ProjectJupyter Notebook with Python code to reproduce and refine it 🔬🖥️🤓
Install devbio-napari to give it a try 🚀 Feedback 💚ly welcome!
github.com/haesleinhuepf/devbi

RT @joshim5
📢 Our new shows how zero-shot Generative AI can create de novo antibodies from scratch.

🏅Hundreds of antibodies are created zero-shot and validated in the wet-lab for the first time ever.

Paper: biorxiv.org/content/10.1101/20
Data: github.com/AbSciBio/unlocking-

RT @JenCWaters
Applications for our Quantitative Imaging From Acquisition to Analysis 2023 course (Apr 11-25) @CSHL are due on Jan 31! . Come immerse yourself in microscopy and image analysis with me, @TalleyJLambert @florianjug @SulianaManley & Hunter Elliott! Please RT meetings.cshl.edu/courses.aspx

RT @EMBLEvents
Do you want to apply deep learning-based methods to your own data and image analysis problems? Join us at , our coding-heavy course where you can learn just that!

📅 5 – 9 June 2023
📩 Apply by 13 March
📍 EMBL Heidelberg
🔗 s.embl.org/mac23-01

RT @Mezarque
A tad late for , but I submitted a set of my arthropod Lego designs to @LEGOIdeas!

My set idea "Arthropod Model Organisms" features models for a fruit fly, amphipod crustacean, red flour beetle, and two-spotted cricket.

Vote here:
ideas.lego.com/s/p:c629ad4459f

1/n

RT @preibischs
Exciting New Year's release of ! It now supports:
1) efficient blocked processing, meaning large, tiled acquisitions are fused blazingly fast (second/minutes instead of hours)!
2) Export of ZARR/N5/HDF5 thanks to the N5-API
Check it out, just update @FijiSc!

RT @LatamBioimaging
🚨Estudiantes de posgrado / posdoctorado en Bioimaging 👩‍💻🧑‍🔬🔬

👀Viste un curso en otro país que te encantó, pero no contás con los medios para viajar

Tenemos un programa para vos !!🎉✈️

Mirá las bases y aplica👇
latambioimaging.org/index.php/ twitter.com/LatamBioimaging/st

Mastodon friends! I will probably post this over on twitter next week, but you're special people and get a sneak peek :) We're hiring a bioimage analyst in my team! This is a "junior" position best suited for someone who knows an image analysis tool or two, can code to a novice/intermediate level, and wants to learn a lot. Remote work (in the US) possible depending on circumstances. Please share widely! thejacksonlaboratory.wd1.mywor

Systems Analyst I/II

Summary Are you a scientist with skills in bioimage analysis who is looking for a nontraditional research career? Are you excited by the opportunity to provide computational resources and support to world-class faculty, who perform leading-edge research in the fields of human genomics and mouse genetics? Come join us in Research IT at The Jackson Laboratory (http://www.jax.org), an independent, nonprofit biomedical research institution internationally recognized for its research excellence. At JAX, our Information Technology is as exciting and progressive as our cutting-edge science. In Research IT, you will help to plan, design, and launch efficient systems for bioimage analysis in support of scientific research. The ideal candidate will have a deep understanding of scientific image data analysis and processing. Preference will be given to candidates with hands-on experience in automated image analysis pipelines, High-Performance Computing (HPC) environments, laboratory information systems, and working collaboratively with researchers and Information Technology. The option to work remotely may be considered for this role on a case-by-case basis. Responsibilities Research and evaluate new tools for applicability to in-house needs. Stay current with new trends and emerging information technologies and informatics tools; advocate for and lead the adoption of these technologies at JAX. Develop appropriate computational strategies to acquire, store, process, and analyze imaging data. Develop and deliver training programs, tutorials, and workshops for scientists on the optimal use of IT resources in their image analysis projects. Assist in preparation for submitting grant proposals. Investigate application issues and document findings. Communicate with scientists to answer questions and troubleshoot problems; provide guidance, support, and advice on Research IT systems. Based on the scientific needs of faculty and research staff, identify and recommend innovative solutions and integrated proposals for server, storage, and network systems; including hardware and software acquisition, installation and administration. Install and update scientific applications in the Research IT environment, including but not limited to relevant HPC clusters. Provide technical support internally and to external vendors, including problem resolution for complex systems and storage solutions. Benchmark application and workflow performance and determine areas for improved efficiencies. Qualifications Level I Bachelor's degree with a minimum of five (5) years of experience, Master's degree with a minimum of three (3) years of experience, or a Ph.D. with zero (0) to two (2) years of experience, in a relevant area of data analysis or management is required Level II Bachelor's degree with a minimum of seven (7) years of experience, Master’s degree with a minimum of five (5) years of experience, or Ph.D. with a minimum of three (3) years of experience, in a relevant area of data analysis or management is required All Levels A background in (or familiarity with) biology and/or microscopy is preferred. Proficient in tool-agnostic image analysis and general-purpose programming Experience with Scikit-image, ImageJ/Fiji, CellProfiler, QuPath, OpenCV or other relevant image analysis tools. Familiar with Cloud computing, Machine Learning, and Artificial Intelligence. Experience with engaging with scientists and open-source communities and operating in a highly interdisciplinary environment Experience with OMERO and/or other storage of large multidimensional arrays (e.g., zarr, N5, HDF5) is preferred. Experience with software development best practices (e.g., git, CI/CD, documentation) is preferred. Experience with medical imaging (e.g., DICOM, MRI, CT), remote sensing, or satellite imaging is not necessary but will be considered a strength About JAX: The Jackson Laboratory (JAX) is an independent, nonprofit biomedical research institution with more than 2,400 employees. Headquartered in Bar Harbor, Maine, it has a National Cancer Institute-designated Cancer Center in Augusta, Maine, a genomic medicine institute in Farmington, Connecticut, and facilities in Ellsworth, Maine, Sacramento, California, and Shanghai, China. Its mission is to discover precise genomic solutions for disease and empower the global biomedical community in the shared quest to improve human health. JAX employees work in a collaborative, value-driven, and team-based environment where the focus is on advancing science and improving patients’ lives. Researchers apply genetics to increase the understanding of human disease and advance treatments and cures for cancer, neurological and immune disorders, diabetes, aging, and heart disease. JAX was voted among the top 15 “Best Places to Work in Academia” in the United States in a poll conducted by The Scientist magazine! EEO Statement: The Jackson Laboratory provides equal employment opportunities to all employees and applicants for employment in all job classifications without regard to race, color, religion, age, mental disability, physical disability, medical condition, gender, sexual orientation, genetic information, ancestry, marital status, national origin, veteran status, and other classifications protected by applicable state and local non-discrimination laws. Bar Harbor: The Jackson Laboratory's 43-acre scenic Bar Harbor campus is nestled between the Gulf of Maine and the mountains of Acadia National Park. Some of the best hiking and biking in the world (over 50 square miles of mountains, lakes, views, and dramatic coastline) is accessible from our campus. We are one mile from downtown Bar Harbor, which offers a vibrant downtown district with a plethora of restaurants, shops, museums, and galleries. Ellsworth: The Charles E. Hewett Center in Ellsworth, Maine, is a state-of-the-art facility that serves researchers world wide. The facility represents the culmination of nine decades of unmatched experience and leadership in breeding and caring for laboratory mice. Ellsworth, Maine, is one of Maine’s fastest growing cities. With a growth rate of nearly 20%, Ellsworth is a bustling year-round community and acts as a hub for surrounding towns. It is located nearby Acadia National Park and hosts numerous special events, concerts and festivals each year. Residents have access to fabulous shopping, recreation, museums, galleries, and dining at a variety of independent restaurants. Farmington: JAX Genomic Medicine is transforming medicine by improving patient care, lowering costs, and increasing life span and health span. JAX Genomic Medicine’s research focuses on the complex genetic causes of disease and on the development of genomic solutions tailored to each person's unique genetic makeup. JAX Genomic Medicine sits on a 17-acre site on the campus of the University of Connecticut Health Center. The 183,500-square-foot facility opened in the fall of 2014. Now, it houses over 300 biomedical researchers, technicians, and support staff in state-of-the-art computing facilities and laboratories. In Connecticut, JAX resides in the scenic town of Farmington, in the state’s capitol region. The Hartford region, which offers some of the best public schools in the country, is made up of both bigger cities and smaller, charming historic New England towns. JAX Genomic Medicine is also geographically located within 2 hours of Boston and New York and is close to multiple transportation systems, including bus lines, highways, railroads and international airports. Sacramento: The JAX® Mice, Clinical and Research Services facility is located in Sacramento, the state capital of California. Sacramento is less than a two-hour drive from San Francisco, Napa Valley, and scenic Lake Tahoe, and a short flight to both Los Angeles and Orange County. Sacramento is the birthplace of the nation’s Farm to Fork movement, and offers excellent restaurants, gastro-pubs, wineries, theaters, and museums. Outdoor activities are plentiful: Boating, white water rafting, and riding the scenic bicycle trails are popular. Housing and other costs of living are more affordable in Sacramento and its surrounding suburbs than in most other neighboring areas in the North Bay, making Sacramento one of the hottest housing markets in the country year after year. Augusta: JAX’s Maine Cancer Genomics Initiative (MCGI) is located in Augusta, Maine, in the Harold Alfond Center for Cancer Care (HACCC), at Maine General Hospital. It began operations in 2016 with three overarching goals: to provide cancer genomic testing for Maine cancer patients; to develop and deliver physician education about clinical genomic cancer diagnostics; and to build a network in Maine of oncology practices conducting studies in genomic medicine.

thejacksonlaboratory.wd1.myworkdayjobs.com

RT @erturklab
Spatial-omics goes 3D🤗! Out at Cell @CellCellPress 👉🏼 We developed DISCO-MS with @labs_mann, a spatial proteomics technology for specimens fully imaged in 3D. DISCO-MS is aided by robotics and enables the study of diseases at their early stages. cell.com/cell/fulltext/S0092-8

RT @CSIC
La presidenta del CSIC, @delPinoE, ha recorrido hoy el nuevo Centro de Investigaciones Interdisciplinares de Alcalá (CI2A), que acoge:
▪️ @CINCnews
▪️ @InstitutoCajal
▪️ @IQOG_CSIC
▪️ @IQM_CSIC
➡️ bit.ly/3FOE2tI

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