RT @tangming2005@twitter.com
23 tools to work with (single-cell) TCR/BCR-seq immune repertoire data 🧵👇
compiled at https://crazyhottommy.blogspot.com/2022/12/23-tools-to-work-with-single-cell.html
🐦🔗: https://twitter.com/tangming2005/status/1600868620128718848
"By becoming our university’s next 'poster person' and participating in our own tokenization, we allow institutions to paint a rosy picture and appear more inclusive and supportive than they actually are."
Raul Ramos discusses the challenges that come with being held up as a “role model” for your community and how he found the strength to keep going. https://elifesciences.org/articles/85166?utm_source=mastodon&utm_medium=social&utm_campaign=organic
My latest column for #NatureMedicine is a look at early human results of a new class of #antibiotics for #tuberculosis
The mechanism of action is essentially to clog the #mycobacterium's tRNA synthetase - the result of two decades of research on boron-based compounds.
"Bias and discrimination are rife in master’s and PhD programmes worldwide, a Nature survey finds."
"Some 35% of respondents from minority racial or ethnic groups say that they have experienced discrimination or harassment during their current programme (see ‘Minority report’). That’s more than twice the rate reported by respondents who do not identify as members of those groups (15%)."
very interesting comment on the difference of sensing pain in women and men: https://www.nature.com/articles/d41586-019-00895-3
tho always weird to give a seminar to myself, it's done! have a listen here if you like: https://youtu.be/i0GAhB3a2F8
the 2nd half is *unpublished* data on #tissue #CD4 #Tcells during #influenza and how they fit into a network of #CD8 #Bcells, #IgA & #NKcells.
I've received feedback from someone working on tumors that some of it brings new perspective on his data. In return I learned some new stuff about bladder cancer.
This open exchange of ideas is why I'm a scientist.
Introducing @emboreports to the fediverse!
We are a society-owned primary @EMBOPress #research #journal publishing papers, reviews and science & society commentaries from all areas of molecular #LifeScience #cellbiology #biochemistry #molecularbiology #immunology #microbiology #cancer #development #structure #signaling and many more.
Check us out: https://embor.embopress.org
We're up next for #globalimmuno talk this Wednesday, November 30th at 9am PST, noon EST, 5pm GMT. It says #Tcells but there will be some #Bcells and #NKcells too!
Title: "CD4 T cells Sans Frontières"
LINK: ucsd.zoom.us/j/91053505061
RT @fabian_theis@twitter.com
1/n Single-cell data analysis is complex with many tools to choose from - but which ones work best and should be used when? Led by @lukasheumos@twitter.com and @AnnaCSchaar@twitter.com, we wrote a free online book that aims to guide single-cell data analysts: https://sc-best-practices.org
🐦🔗: https://twitter.com/fabian_theis/status/1595810545365565447
This week's special issue on #CellEngineering in #Science (@sciencemagazine) includes:
• a review on future of engineered #immunotherapies by Darrell Irvine, Marcela Maus, David Mooney, & Wilson Wong: https://bit.ly/Sci_abq6990
• a piece on engineering #bacteria for anti- #cancer therapies by
Candice Gurbati, Nick Arpaia, & Tal Danino: https://bit.ly/Sci_add9667
Be sure to also check out the introduction written by my fantastic colleagues Bryan Ray & Priscilla Kelly: https://bit.ly/Sci_adf8627
RT @CKemperLab@twitter.com
Hi all. We're happy to share our latest paper, just published in @CellReports@twitter.com. We developed a scRNA-seq pathway analysis package and applied it to look at T cell activation in vitro and in tissue. Here's the paper: https://www.cell.com/action/showPdf?pii=S2211-1247%2822%2901571-6.
🐦🔗: https://twitter.com/CKemperLab/status/1595107629637857282
black #lymph nodes (draining lung) due to accumulation of environmental pollutants in #macrophages. increases with age. work by Donna Farber lab #ColumbiaUniversity https://www.nature.com/articles/s41591-022-02073-x
Bringing V(D)J analysis to the single-cell space is difficult. We continued to developed dandelion to help with this, finding some interesting new biology along the way in this new pre-print! @Cambridge_Uni@twitter.com @sangerinstitute@twitter.com @ClatworthyLab@twitter.com @teichlab@twitter.com https://www.biorxiv.org/content/10.1101/2022.11.18.517068v1
If you're looking for some quality science writing, my friend Olivia Judson has a new piece over at Aeon (no paywall).
"Darwin, of course, is famous for his work on evolution. His book On the Origin of Species (1859) laid out a wealth of evidence that evolution occurs, and proposed a mechanism – natural selection – for how it does so. Although much has been learned since, and many of his ideas have been extended, corrected or refined, the Origin remains the founding text of modern biology, and is the pinnacle of Darwin’s work. But Darwin’s first scientific monograph and his last – the two bookends of his thoughts, so to speak – were both about how animals have, over vast spans of time, transformed the landscape."
#Evolution #EvolutionaryBiology #Geology #Aeon #AeonMagazine #Darwin
https://aeon.co/essays/the-insight-of-darwins-work-on-corals-worms-and-co-evolution
I'll be teaching an one-line Bioconductor for Mass Spectrometry and Proteomics course on the 27 - 29 March 2023:
https://www.physalia-courses.org/courses-workshops/course58/
If you want to learn on your own, all the software and the material is openly available at:
New #colitis study from LJI's Kronenberg Lab: https://www.frontiersin.org/articles/10.3389/fimmu.2022.1034648/full
The team investigated whether increased expression of two GPRs (GPR183 and GPR18) in the intestine is related to disease severity in colitis models.
#Immunology #Tcells #ImmuneSystem #CellularBiology #MolecularBiology #GPRs #infammation #BowelDisease #Health #MouseModels
My latest Clinical Pipeline column at #NatureMedicine is just out.
This was an interesting piece for me, to see what's going with drugs targeting #TGFbeta family molecules in a clinical setting, in this case an activin receptor 2a/IgG1 Fc domain fusion protein selectively mopping up ligands. The drug's been through trials in oncology, thalassemia & other conditions, but it looks like it had a good hit in pulmonary arterial #hypertension.
Just getting set up on here. Looking forward to connecting with the #immunology #science mastodon community!
"Big trials are expensive, so you can either avoid diseases with big trials or try to argue for ways to make them smaller (through surrogate endpoints, perhaps, or with fewer arms in the dosing groups). But those shortcuts will invariably give you (and the regulators evaluating your drugs) less useful data to work with"
Derek Lowe, In the pipeline.
https://www.science.org/content/blog-post/better-trials-someday
#intro
Hello! I am a PhD student in System Biology at #UdeM. I am passionate about science and in love with #immunology
Bachelor in Biology-Genetics #ufrj
Masters in Oncology #inca (Brazilian National Cancer Institute),
I've been working on onco-immunology for 10 years. I started by improving CAR-T cell design, and in the last five years, I focused on understanding the tumor immune microenvironment using #scrnaseq #bioinfo
🇧🇷 PhD student - University of Montreal