arXiv Quantitative Biology @arxiv_bio@qoto.org

Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation https://arxiv.org/abs/2406.03979 #qbioBM #mathAT #qbioQM

A Hybrid Deep Learning Classification of Perimetric Glaucoma Using Peripapillary Nerve Fiber Layer Reflectance and Other OCT Parameters from Three Anatomy Regions https://arxiv.org/abs/2406.03663 #eess.IV #qbioQM #cs.LG

CORTEX: Large-Scale Brain Simulator Utilizing Indegree Sub-Graph Decomposition on Fugaku Supercomputer https://arxiv.org/abs/2406.03762 #qbioNC #cs.DC

From operculum and body tail movements to different coupling of physical activity and respiratory frequency in farmed gilthead sea bream and European sea bass. Insights on aquaculture biosensing https://arxiv.org/abs/2406.03859 #qbioPE #cs.CV

Information Benchmark for Biological Sensors Beyond Steady States -- Mpemba-like sensory withdrawal effect https://arxiv.org/abs/2406.04304 #cond-mat.stat-mech #physicsbioph #qbioQM

The combinatorial code and the graph rules of Dale networks https://arxiv.org/abs/2211.08618 #qbioNC

Deciphering regulatory architectures from synthetic single-cell expression patterns https://arxiv.org/abs/2401.15880 #qbioGN #qbioQM

Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling https://arxiv.org/abs/2403.03234 #qbioGN #csLG

Kirigami: large convolutional kernels improve deep learning-based RNA secondary structure prediction https://arxiv.org/abs/2406.02381 #qbioBM #csAI

MoFormer: Multi-objective Antimicrobial Peptide Generation Based on Conditional Transformer Joint Multi-modal Fusion Descriptor https://arxiv.org/abs/2406.02610 #qbioQM #csAI #csLG

Immunocto: a massive immune cell database auto-generated for histopathology https://arxiv.org/abs/2406.02618 #qbioQM #eessIV #csAI

The Vertebrate Breed Ontology: Towards Effective Breed Data Standardization https://arxiv.org/abs/2406.02623 #qbioOT #csDL

Modeling PROTAC Degradation Activity with Machine Learning https://arxiv.org/abs/2406.02637 #qbioQM

Neural Representations of Dynamic Visual Stimuli https://arxiv.org/abs/2406.02659 #qbioNC #csAI #csCV

Vagus nerve stimulation: Laying the groundwork for predictive network-based computer models https://arxiv.org/abs/2406.02729 #qbioNC

Mathematical Methods for Assessing the Accuracy of Pre-Planned and Guided Surgical Osteotomies https://arxiv.org/abs/2406.02824 #qbioQM

How cells stay together; a mechanism for maintenance of a robust cluster explored by local and nonlocal continuum models https://arxiv.org/abs/2406.02846 #qbioCB

GET: A Generative EEG Transformer for Continuous Context-Based Neural Signals https://arxiv.org/abs/2406.03115 #qbioNC

Floating Anchor Diffusion Model for Multi-motif Scaffolding https://arxiv.org/abs/2406.03141 #qbioBM #csLG

Markov Chain Monte Carlo with Gaussian Process Emulation for a 1D Hemodynamics Model of CTEPH https://arxiv.org/abs/2406.01599 #physicsdataan #qbioQM #statAP #csCE #csLG