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'Reviewing the literature, the paper suggests that over 70% of the putative "dark metabolome" is merely an experimental artifact. This is of course not good news for all the people who have been trying to assign these peaks, nor for the other groups who have been trying to model metabolism computationally based on the typical mass spec assumption that any unassigned peaks are due to separate new species. People are going to have to rethink a lot of the ESI mass spec data out there, it seems.'
science.org/content/blog-post/

'GSK has reached a licensing agreement with mRNA vaccine developer CureVac worth up to €1.4bn to develop its vaccines for flu, Covid-19 and avian flu.
The UK drugmaker has an existing collaboration with the German vaccine maker but it will pay €400mn to CureVac to take full control of developing vaccines under the agreement.'
ft.com/content/9974696e-ab2c-4

'The network was born of the era of self-improvement, when the educational benefits of libraries for all citizens, irrespective of their social status, was regarded as an important element in driving the nation forward.

In this anniversary year, it is a tragic irony that the system is now facing one of the most severe challenges in its history. More than 800 public libraries have closed since 2010. More closures are expected.'

ft.com/content/9b5f3765-dc64-4

'With a rich dataset of 218,154 cells, this work provides a basis for differentiating commercial scRNA-seq technologies, which is intended to facilitate the effective application and further methodological development of single cell transcriptomics.'

biorxiv.org/content/10.1101/20

'O medo é um sentimento monopolista: quando temos medo, não conseguimos pensar em mais nada. E foi no excitar do medo através de um meio de comunicação de massas que os fascistas se tornaram diabolicamente eficazes.'
@ruitavares
expresso.pt/semanario/revista-

Phage v Phage
'Birkholz et al. have discovered that a mobile intron containing a homing endonuclease found within a viral RNA polymerase gene in one bacteriophage blocks productive infection by a related and competing coinfecting bacteriophage.'
science.org/doi/10.1126/scienc

'Even without exposure to antigens, some CARs increase proliferation and nutrient uptake in T cells. Using stable isotope tracers and mass spectrometry, we observed basal metabolic fluxes through glycolysis doubling and amino acid uptake overtaking anaplerosis in CAR-T cells harbouring a rituximab scFv, unlike other similar anti-CD20 scFvs.'

nature.com/articles/s42255-024

'Depuis le coup de tonnerre de la dissolution, le monde de la recherche a multiplié les prises de position publiques pour dénoncer les périls qui accompagneraient l’arrivée au pouvoir du Rassemblement national (RN). Avant même le premier tour des législatives, cinq Prix Nobel français, associés à de nombreux chercheurs, soulignaient, le 25 juin, dans une tribune au Monde, que cela constituerait « une menace grave et immédiate pour la recherche et l’enseignement supérieur en France », du fait de « positions xénophobes et nationalistes » qui « isoleraient la France de la communauté scientifique internationale ». Le Collège de France, l’Académie des sciences et d’autres institutions scientifiques ont, depuis, fait état de leurs inquiétudes.'
lemonde.fr/politique/article/2

'Stimulator of IFN genes (STING) is a critical component of the innate immune system, playing an essential role in defending against DNA virus infections. However, the mechanisms governing basal STING regulation remain poorly understood. In this study, we demonstrate that the basal level of STING is critically maintained by hypoxia-inducible factor 1 (HIF-1)α through transcription.'

journals.aai.org/jimmunol/arti

'Protein synthesis and decay rates must be tightly coordinated to ensure proteome homeostasis. How this coordination is established is unknown. Here we use quantitative live cell imaging combined with computational inference to determine how changes in global protein synthesis rates alter protein decay rates'

biorxiv.org/content/10.1101/20

Thanks to Professor Naomi Ekas, here's another example of a very fast hippo trotting in the wild-- recorded on June 18 at 11:18 am (Central Serengeti, Tanzania). Check out how long it goes for, over dry ground and then, hoo boy, watch that finish! Amazing. (used w/permission)
x.com/JohnRHutchinson/status/1

Influenza A defective viral genome production is altered by metabolites, metabolic signaling molecules, and cyanobacteria extracts biorxiv.org/content/10.1101/20

Early-life Microbiome-Derived HCA Enhances Type 3 Immunity via FXR-dependent m6A RNA methylation biorxiv.org/content/10.1101/20

Dissecting cell-free DNA fragmentation variation in tumors using cell line-derived xenograft mouse biorxiv.org/content/10.1101/20

Keep your eyes on baby pygmy hippo at start of this video (adult does a nice trot, in addition). This gait isn't ever seen in the larger common hippo. Which, as we note in our paper, raises awesome evolutionary biomechanics questions. Follow-up studies! youtube.com/watch?v=nmsZwwWYJk

'Para que isso aconteça, o exemplo da Frente Popular original é ainda o melhor guia. É o foco no bem-estar das pessoas, na qualidade de vida e na capacidade de os empregados e trabalhadores terem rendimento suficiente para terem uma vida digna e confortável que terão de estar os objetivos que permitirão afastar a França do abismo de um colapso do Estado de direito, da democracia e dos direitos fundamentais.'
@ruitavares
expresso.pt/opiniao/2024-07-04

'Stanford, the SIO’s institutional home, denies that it is dismantling the unit and loudly proclaims its commitment to independent research. On the other hand, according to DiResta, the university has run up “huge legal bills” defending SIO researchers from harassment by Republican politicians and conservative conspiracy theorists, and may have decided that enough is enough.'
theguardian.com/commentisfree/

Natural variation in starvation sensitivity maps to a point mutation in phospholipase IPLA2-VIA in Drosophila melanogaster biorxiv.org/content/10.1101/20

'It’s been clear for some time what went wrong, but almost none of those issues have been fixed. That means that the next desperately needed vaccine stands every chance of running into those same problems.'
nytimes.com/2024/07/05/health/

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