Stephan Preibisch @preibischs@qoto.org

Congratulations Dr. Preusser!

Great defense, I’m very happy we could do this in person at the BIMSB / @MDC_Berlin 😊

We are looking for a software engineer with background in mathematics and/or image alignment to work with us on reconstructing very large electron microscopy volumes:

https://hhmi.wd1.myworkdayjobs.com/en-US/External/job/Scientific-Computing-Software-Engineer_R-1972?locations=d48b8f09725a105a7c43ec0c1b9f4993

Follow-up update for #BigStitcher is out! Now supports:
1) export of BigDataViewer/BigStitcher compatible HDF5/N5 datasets
2) export of #OpenSeadragon datasets for 2D images and 2D slices of 3D images

Exciting New Year's release of #BigStitcher! It now supports:

1) efficient blocked processing, meaning large, tiled acquisitions are fused blazingly fast (second/minutes instead of hours)!

2) Export of ZARR/N5/HDF5 thanks to the N5-API

Check it out, just update Fiji!

I got curious about #ChatGPT and the associated questions related to ownership - so I quickly created a #German #cookbook with outstanding recipes by asking #ChatGPT questions and DALL-E to generate images ... check it out

https://drive.google.com/file/d/17DXeTqENrpP3sHQouPMQ8bujsVYp0Wdp/view?usp=sharing

Which license does code have that #chatGPT creates? Can I use it and license as anything I want? #chatGPT itself did not answer the question ...

For those who still have a Twitter account, you might want to vote on this one

The amazing PhD work of
Friedrich Preusser is now out as Open Access in BMC Biology! It was so great to have you in the lab!

"Long-term imaging reveals behavioral plasticity during C. elegans dauer exit"

https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01471-4

@HHMI @MDC_Berlin

It was great experience visiting and presenting at the LMB in Cambridge yesterday! Thanks so much for hosting me @albertcardona and for organizing a really nice dinner with Greg Jeffries at the traditional Cambridge Pembroke college!

This shapes up to become a really exciting discussion at "New Opportunities in Imaging Data Analysis & Integration": open data, AI, open source tools, ... @ASCBiology @embojournal @avweigel @priscaliberali @tlemberger @
https://twitter.com/tlemberger/status/1600134150987448320?s=46&t=0Wi84uCnB9zWHbg5YhB8Ow

Does anyone know why the Apple mastodon app doesn’t know #qoto ?

RS-FISH was just released as open access article in @naturemethods

RS-FISH is a user-friendly software for accurate spot detection that is applicable to smFISH experiments, spatial transcriptomics, and spatial genomics. The approach enables fast spot detection in even very large volumetric datasets.

https://github.com/PreibischLab/RS-FISH
https://github.com/PreibischLab/RS-FISH-Spark

https://www.nature.com/articles/s41592-022-01669-y