'We generated personalized libraries of neoantigen–HLA capture reagents to single-cell isolate the T cells and clone their T cell receptors (neoTCRs). Multiple T cells with different neoTCR sequences (T cell clonotypes) recognized a limited number of mutations in samples from seven patients with long-lasting clinical responses.'
If you’re interested in #statistics, #Metascience, #openScience, #pHacking, etc., this is quite a good read.
Beautiful.
Tumulus, by François Chaignaud, Geoffroy Jourdain
https://youtu.be/NVNWtfLa_3Q
We are thrilled to announce our list of speakers for the European Developmental Biology Congress
Registration and website coming soon.
More info earlier in this thread
RT @TrainingVbc
The Vienna BioCenter PhD Program Spring call is now open! We have 25 fully-funded positions in the Molecular Biosciences for young researchers in the life sciences.
Please RT!
https://bit.ly/3YYvA38
@IMPvienna @IMBA_Vienna @gmivienna @maxperutzlabs @univienna @MedUni_Wien
How 'Recognition and Rewards' in Dutch academia turned metrics into incentives https://doi.org/10.36850/p761-ey93
"In the end, we should realize that ‘recognition and rewards’ is not about quantitative or qualitative indicators: it are the social and political goals of science that are at stake"
'Pot1 is a subunit of telomere capping complex that binds to the G-rich overhang and inhibits the activation of DNA damage checkpoints. In this study, we explore new functions of fission yeast Pot1 by using a pot1-1 temperature sensitive mutant'
@miguelgf et al
'Vacuum tubes could allow systems to be reprogrammed; they could be used repeatedly and flexibly. The tubes made complex computations possible, but they were unwieldy, both prone to breakage and laborious to repair. ENIAC, the US army’s world-leading computer, introduced in 1946, used 18,000 vacuum tubes to calculate artillery trajectories faster and more accurately than any human. That made it revolutionary, but its utility was limited by the fact that it was the size of a room, and that whenever a single tube failed, which happened on average every two days, the whole machine broke down.'
https://www.lrb.co.uk/the-paper/v45/n06/john-lanchester/putting-the-silicon-in-silicon-valley
'The writer’s laptop, a MacBook Air, uses another ‘system on a chip’, Apple’s M2. That single chip contains 20,000,000,000 transistors. The laptop contains so many transistors that if the writer travelled back in time to 1983, he could give every single person on the planet a transistor radio and still have a billion of them left over.'
https://www.lrb.co.uk/the-paper/v45/n06/john-lanchester/putting-the-silicon-in-silicon-valley
'Wired reports that Twitter is planning to charge researchers a minimum of $504,000 a year to access less data than they used to get for free.'
@NicoleCRust @MatteoCarandini @Iris @knutson_brain @albertcardona @schoppik @cyrilpedia
Niv, Y. (2021). The primacy of behavioral research for understanding the brain. Behavioral Neuroscience
'A large-scale screening identifies an inhalable polymer nanoparticle formulation that safely and effectively delivers therapeutic mRNA molecules to the lungs of several animal species.'
How to Speak: Watch the Lecture on Effective Communication That Became an MIT Tradition for Over 40 Years
https://www.openculture.com/2020/10/how-to-speak-mit-lecture.html
A conversation I had with Marcel LaFlamme @PLOS on #preprints, #peerreview, AI, and, of course, #ReviewCommons has just been posted on the @ReviewCommons site
"As we ask peer review to do more and more things, should we also be looking at new ways to recognize the work of reviewers?
Another way to ask that question is: should outputs other than published articles and big grants count toward research assessment and the development of scientific careers?"
1/6
😲 Two recent studies from China look at the truly wide diversity of RNA viruses found in ticks.
"Extensive diversity of RNA viruses in ticks revealed by metagenomics in northeastern China"
https://doi.org/10.1371/journal.pntd.0011017
"Metavirome of 31 tick species provides a compendium of 1,801 RNA virus genomes"
https://www.nature.com/articles/s41564-022-01275-w
A lot of insights in these two studies, so I'll just point out a few things that I personally found interesting.
'Graham’s blue eyes lasered in on me. “This woman has untreated diabetes,” he said. “It’s caused her to have thousands of small strokes that have killed all these parts of her brain. That’s what’s causing her dementia.”
“I didn’t know it could do that,” I said—a response that revealed my ignorance. I’d never even looked up the symptoms of untreated diabetes; I had assumed that a patient would never grow this sick from a common and manageable disease.'
https://www.newyorker.com/science/annals-of-medicine/the-assumptions-doctors-make
Cochrane Reviews has issued an editor's statement about the mask-wearing paper that has been getting so much attention lately.
Below, the statement, in which they both endeavor to clarify the implications of the study and take responsibility for the poor initial job of public communication.
This sort of post-publication clarification is a valuable service, and indeed it's not the first time that such as has been necessary for a paper about the efficacy of masks.
A 2020 paper in the New England Journal of Medicine was so frequently misrepresented by anti-mask commentators that it now carries the following editor's note prominently at the top of the article webpage.
I've worked on all of science, from B cells to T cells.
https://fellowsherpa.com