Nicola Romanò @nicolaromano@qoto.org

Our latest: Deep dynamical modelling of developmental trajectories with temporal transcriptomics

- Optimised metabolic labelling for time resolved scRNAseq
- Deep learning (VAE) for RNA velocity
- Predicting expression dynamics with a neural SDE system

https://www.biorxiv.org/content/10.1101/2023.07.06.547989v1

204 Mastodon posts with the #PositConf2024 hashtag so far in my app! Search through them all here, on a Web page that includes NONE of today's advice on how to make Quarto docs or apps look nice 😅
https://apps.machlis.com/shiny/positconf/

Someone is vastly underestimating academics’ appetency to not pay for things.

https://www.theregister.com/2024/08/08/anaconda_puts_the_squeeze_on/

Announcing Zotero 7, the biggest update in Zotero’s 18-year history

https://www.zotero.org/blog/zotero-7/

Drawing: Possible causes of your problems. I've been appalled at the scenes we've witnessed over the last few days. It's utterly unacceptable that people should have to live in fear because of the colour of their skin.
[Polite comments only, please.]

I wrote a thing about switching from Windows to Linux for music production. Not a step-by-step guide, but a bunch of (hopefully) helpful info and links for those who might be considering the switch. Will probably also be useful for those new to the whole computer music thing who are interested in Linux as a starting point.

#LinuxAudio #MusicProduction

https://www.fstateaudio.com/?page_id=1763

As a Blind person i never thought i would be on social media savoring photos. But the communal Mastodon alt text game is so strong that sweet, poetic or silly descriptions abound on my timeline. Thanks to legions of people who take time to write a meaningful description of the ephemera they post, i learn so much about insects, plants, buildings, memes — all dispatches from a dimension of the world that i otherwise wouldn't experience. If you're wondering whether anybody reads these things: YES.

Did you forget to write some slides? do you want something quick and easy? try using my new quarto revealjs plugin: loud

All text on slides are automatically centered and zoomed in to fill the screen

https://github.com/EmilHvitfeldt/quarto-revealjs-loud

"Our framework suggests that after accounting for heterogeneity, the probability that the tested hypothesis is true for the average population, design, and analysis path can be much lower than implied by nominal error rates of statistically significant individual studies." #MetaSci #Methodology 🧪

Heterogeneity in effect size e...

@LianaBrooks excellent points! May I add:

Privilege comes in many shapes and sizes, it’s not all-or-nothing, so you can have various types of privilege without having every possible advantage in life. You can have struggles & suffer injustice and still have privilege in some form. You can have privilege in one area and lack of privilege in another.

‪Looking for literature for review paper:
Is there quantitative data that beauty/aesthetics in charts help user engagement/effectiveness/memory?

#Datavisualization #DataViz #ComputerScience

Great new blogpost by Eiko Fried on “zombie theories” in science, research waste, and moving forward. #OpenScience #academia

https://eiko-fried.com/zombie-theories-why-so-many-false-ideas-stick-around/

Everybody's Free (To Write Websites)

Enbies and gentlefolk of the class of '24:

Write websites. If I could offer you only one tip for the future, coding would be it. The long term benefits of coding websites remains unproved by scientists, however the rest of my advice has a basis in the joy of the indie web community's experiences. I will dispense this advice now:

I can't believe that in 2024 we still have to explain so bluntly that "Academic journals are a lucrative scam". Yet here we are ...
Kudos to the Editorial Board of Philosophy & Public Affairs for resigning en masse and thank you to Arash Abizadeh for explaining why and what's next in the Guardian:
https://www.theguardian.com/commentisfree/article/2024/jul/16/academic-journal-publishers-universities-price-subscriptions

"'With the R515 driver, #NVIDIA released a set of #Linux GPU #kernel modules in May 2022 as open source with dual GPL and MIT licensing. […]

Two years on, we’ve achieved equivalent or better application performance with our open-source GPU kernel modules […]

We’re now at a point where transitioning fully to the open-source GPU kernel modules is the right move, and we’re making that change in the upcoming R560 driver release. […]'"

https://developer.nvidia.com/blog/nvidia-transitions-fully-towards-open-source-gpu-kernel-modules/